Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq2605 152 9e-32
seq2718 147 4e-30
seq603 136 7e-27
seq1558 123 5e-23
>seq2605
Length=276952
Score = 152 bits (168), Expect = 9e-32
Identities = 173/230 (75%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||||||||| || | ||||||||| || |||| |||||| ||||||||| || |
Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
|| | || | || |||||||| || || |||||||||| | |||||| ||||| ||
Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGTATCTGACGATTCTA 172020
|||||||| |||||||| ||||| || |||| ||| |||||||| || | || |
Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 241946
Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070
| || ||||| ||||| ||||| || | ||||| | ||| || ||||||
Sbjct 241945 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896
>seq2718
Length=1670031
Score = 147 bits (162), Expect = 4e-30
Identities = 450/702 (64%), Gaps = 13/702 (2%)
Strand=Plus/Minus
Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016
||| ||||||||||| | ||| | |||||| || ||||||||||| | || || |
Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429
Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 39076
|| || || ||| | ||||| | || |||| ||||||| |||||| ||
Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369
Query 39077 tata---ttattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAA 39133
||| | ||| ||| | ||| |||| ||| | | | | || |||||||| ||
Sbjct 71368 AATACGCTCATTACTTGGTT-TTTGTATTAAATGT---TGGAACATC--AAACATGCGAA 71315
Query 39134 ATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 39193
|| ||| | || || || | || || | |||||| ||| || || ||||||||
Sbjct 71314 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 71255
Query 39194 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 39253
||| || | || |||||||| || || || |||||||| | | ||||| ||||| ||
Sbjct 71254 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTC 71195
Query 39254 CACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA--AATCCAA 39311
|| |||||||| |||| | | | ||||| || | | || || |||||||
Sbjct 71194 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCCGA-CTTCGAAGAAATCCAA 71137
Query 39312 TTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 39371
| ||||||||||| || || | | ||| || | |||||||| || |||||
Sbjct 71136 GCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 71077
Query 39372 TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAA 39431
|| |||||||||||||
Sbjct 71076 CAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 71017
Query 39432 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACT 39491
|| ||| ||||| || ||||||||| ||| || | ||| |||| || |||
Sbjct 71016 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 70957
Query 39492 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 39551
|| |||| |||||||||| ||| ||| ||||||||||||||||| ||||| ||
Sbjct 70956 TCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 70897
Query 39552 GCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 39611
||||| || | |||||||||| ||||||||| | | | ||||| || | |
Sbjct 70896 GCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATA 70837
Query 39612 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653
|| || || | ||||||||| |||| |||||| || ||||||
Sbjct 70836 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCT 70795
>seq603
Length=780983
Score = 136 bits (150), Expect = 7e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | || ||||| | |||| ||| || || || |||||
Sbjct 745799 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 745740
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || ||| |||| |||| ||||||||| ||||| ||||| | ||||| || ||
Sbjct 745739 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 745680
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| || ||| ||| ||||| |||||||| || | |||
Sbjct 745679 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 745620
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072
|| || ||||| ||||| || ||||| || || || | ||| || ||||||||
Sbjct 745619 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567
Score = 107 bits (118), Expect = 3e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
||||| || || || |||| ||| | || || | ||| || || |||||||| || |
Sbjct 747734 ATATTGTAGTCGGACAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGT 747675
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
||||| || ||||| || |||||||||||||| || ||| || ||||| || |||
Sbjct 747674 TGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTA 747615
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
||||| | || ||||| | || |||||||| ||||| | || |||| ||| || |||
Sbjct 747614 TCTGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGC 747555
Query 172068 At 172069
||
Sbjct 747554 AT 747553
>seq1558
Length=2163639
Score = 123 bits (136), Expect = 5e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| |||||||| | ||| || | || ||||| | || | ||| || || || ||
Sbjct 2034180 ATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAG 2034121
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| || || | || | || |||||||| || || || || || || | |||||| ||
Sbjct 2034120 TCGGACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCT 2034061
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
|| || || || ||||||||||| |||||| ||| ||||| || || || || |
Sbjct 2034060 GGGGGGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGC 2034001
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072
|| || |||| |||||||| ||||||||||| ||||| | ||| |||||||||||
Sbjct 2034000 TCGACCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905098595254800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |