Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2605 152 9e-32 seq2718 147 4e-30 seq603 136 7e-27 seq1558 123 5e-23 >seq2605 Length=276952 Score = 152 bits (168), Expect = 9e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||||||| || | ||||||||| || |||| |||||| ||||||||| || | Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||||||| || || |||||||||| | |||||| ||||| || Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGTATCTGACGATTCTA 172020 |||||||| |||||||| ||||| || |||| ||| |||||||| || | || | Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 241946 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070 | || ||||| ||||| ||||| || | ||||| | ||| || |||||| Sbjct 241945 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896 >seq2718 Length=1670031 Score = 147 bits (162), Expect = 4e-30 Identities = 450/702 (64%), Gaps = 13/702 (2%) Strand=Plus/Minus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 ||| ||||||||||| | ||| | |||||| || ||||||||||| | || || | Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 39076 || || || ||| | ||||| | || |||| ||||||| |||||| || Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 39077 tata---ttattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAA 39133 ||| | ||| ||| | ||| |||| ||| | | | | || |||||||| || Sbjct 71368 AATACGCTCATTACTTGGTT-TTTGTATTAAATGT---TGGAACATC--AAACATGCGAA 71315 Query 39134 ATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 39193 || ||| | || || || | || || | |||||| ||| || || |||||||| Sbjct 71314 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 71255 Query 39194 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 39253 ||| || | || |||||||| || || || |||||||| | | ||||| ||||| || Sbjct 71254 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTC 71195 Query 39254 CACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA--AATCCAA 39311 || |||||||| |||| | | | ||||| || | | || || ||||||| Sbjct 71194 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCCGA-CTTCGAAGAAATCCAA 71137 Query 39312 TTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 39371 | ||||||||||| || || | | ||| || | |||||||| || ||||| Sbjct 71136 GCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 71077 Query 39372 TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAA 39431 || ||||||||||||| Sbjct 71076 CAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 71017 Query 39432 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACT 39491 || ||| ||||| || ||||||||| ||| || | ||| |||| || ||| Sbjct 71016 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 70957 Query 39492 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 39551 || |||| |||||||||| ||| ||| ||||||||||||||||| ||||| || Sbjct 70956 TCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 70897 Query 39552 GCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 39611 ||||| || | |||||||||| ||||||||| | | | ||||| || | | Sbjct 70896 GCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATA 70837 Query 39612 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 || || || | ||||||||| |||| |||||| || |||||| Sbjct 70836 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCT 70795 >seq603 Length=780983 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | |||| ||| || || || ||||| Sbjct 745799 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 745740 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| |||| ||||||||| ||||| ||||| | ||||| || || Sbjct 745739 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 745680 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || ||| ||| ||||| |||||||| || | ||| Sbjct 745679 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 745620 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072 || || ||||| ||||| || ||||| || || || | ||| || |||||||| Sbjct 745619 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || || |||| ||| | || || | ||| || || |||||||| || | Sbjct 747734 ATATTGTAGTCGGACAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGT 747675 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| || |||||||||||||| || ||| || ||||| || ||| Sbjct 747674 TGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTA 747615 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | || ||||| | || |||||||| ||||| | || |||| ||| || ||| Sbjct 747614 TCTGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGC 747555 Query 172068 At 172069 || Sbjct 747554 AT 747553 >seq1558 Length=2163639 Score = 123 bits (136), Expect = 5e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | || ||||| | || | ||| || || || || Sbjct 2034180 ATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAG 2034121 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || |||||||| || || || || || || | |||||| || Sbjct 2034120 TCGGACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCT 2034061 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || ||||||||||| |||||| ||| ||||| || || || || | Sbjct 2034060 GGGGGGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGC 2034001 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072 || || |||| |||||||| ||||||||||| ||||| | ||| ||||||||||| Sbjct 2034000 TCGACCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905098595254800