Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2774 154 4e-32 seq3007 111 5e-19 seq2718 111 5e-19 seq2 100 8e-16 seq459 96.9 1e-14 seq2785 84.2 6e-11 >seq2774 Length=1624295 Score = 154 bits (170), Expect = 4e-32 Identities = 210/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||||||||| ||||| || ||||| ||| | ||||| || |||||||| || ||| Sbjct 1048527 TTGATTAAACGCCGCTGTATGTAACCCGTTTCTGCAGTTTTCACGGCTGTATCGATAAGA 1048586 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||| || ||||| ||||||||| | | ||| ||| ||| ||| | | | | Sbjct 1048587 CCTTCACGTCCGCCCATTGCATGGAAGTAGAACTCACTTGGTGTTAGGCCCGCTAGATAT 1048646 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 || |||| | ||| || |||||||| ||| || ||| ||| |||||||||||| Sbjct 1048647 GAATTCTCGATGAAGCCGCGCGCCTCTGGCCCATAATCGTCTTTGATAAAGTGTGGCATT 1048706 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 || | || | | ||||| || ||||| || || || ||||||||||| || | ||| Sbjct 1048707 GTACGTTTACGAAAACCGTAAGGTATACGTTTACCTTCGACGTTCTGCTGGCCAACGCAG 1048766 Query 302824 GAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||| ||| || || || | || | |||||||| || || ||||||| Sbjct 1048767 GCAATCACCTGTGATATGTTAATATTAGAACCCTTGGAACCTGCGATTACCAT 1048819 Score = 87.8 bits (96), Expect = 5e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 233263 AAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACC 233322 |||| || ||| || |||| ||| ||||||||||||||| ||||| | ||| ||||| Sbjct 1065022 AAATTGTGCAGCTCCATGAGATATCTGACAATCACGTTCCATCTCACCGAAACGTAGACC 1065081 Query 233323 ACCATCATTTGACCTACCCTGGACTGTTTGACG-AGTTAAAACAGTTCTTGGACCCTGAG 233381 ||||||| || |||||||| | | |||||| | | ||| | || | ||||| | | Sbjct 1065082 ACCATCACGTGCCCTACCCTCCATAGGTTGACGCACTAAAATCTGTAC-GGGACCACGTG 1065140 Query 233382 CACGATAATTAATTTTATCTTTAACCATATGCTTCAG 233418 | ||| | | |||||| || | ||||| ||||| || Sbjct 1065141 CCCGAGAGTGAATTTTGTCATCCACCATGTGCTTGAG 1065177 >seq3007 Length=1367349 Score = 111 bits (122), Expect = 5e-19 Identities = 202/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||| ||||||||||| ||| || || || ||||| ||| Sbjct 215821 TCCATAGCCTTTATGAGGCGACGTTGAATATAACCGGTTTCAGCAGTCTTGACAGCAGTA 215880 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| || ||| | | ||| ||| | || Sbjct 215881 TCGATAAGACCTTCACGACCACCCATAGCGTGAAAGTAGAACTCCGAAGGTGTCAAGCCG 215940 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || |||| ||||| ||||||| ||| || || ||||||| || | Sbjct 215941 GCAAGATATGAATTCTCCACGAAGCCACGCGACTCAGGACCGTAATCGTC---TTTAATG 215997 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||| || | || | |||||||| ||||| || || || |||||||| Sbjct 215998 AAATGCGGCAATGTGCGTTTACGGAAACCGTATGGTATACGTTTACCTTCGACGTTCTGT 216057 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || |||| || | ||| | ||| || || || | || |||||||| || Sbjct 216058 TGACCCACACAAGCAATAACCTGTGAGATGTTAATATTGGAACCCTTGGAACC 216110 >seq2718 Length=1670031 Score = 111 bits (122), Expect = 5e-19 Identities = 327/496 (66%), Gaps = 10/496 (2%) Strand=Plus/Plus Query 133154 GAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACAT 133213 ||||||||| | || ||||| | | |||| | ||| |||| ||||| |||| Sbjct 70817 GAAGTAGATCTTTCTAAAGATATGGATGATTGGGCACGCCTCACTGATAATGAACGACAT 70876 Query 133214 TTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTA 133273 |||||||| | ||||| ||||| || || |||||||||||| ||||||| || Sbjct 70877 TTTATTTCCCACGTGTTAGCCTTTTTCGCCGCATCTGATGGTATTGTGAATGAAAATGTA 70936 Query 133274 G--GAACACGGTTTATGGGA-GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTA 133330 | |||| | || || | ||||| ||| || | || || ||| ||| ||||| | Sbjct 70937 GTTGAAC---GCTTCTGCCAGGAAGTCCAAGTGACAGAGGCACGTTGCTTCTATGGATTT 70993 Query 133331 CAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATC 133390 || ||||||||||| ||| | |||||| | ||| | |||||||||| || || Sbjct 70994 CAAATTGCGATGGAGAATGTGCATTCTGAAATGTATAGCATATTAATTGATACATATATT 71053 Query 133391 AAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAA 133450 || || | || | | | ||||||| || | ||| || | | || |||| Sbjct 71054 AAGGACTCGAAACAAAGGAATTGCTTATTCAATGCTA-TAGAGACAATGCCTGCCGTAAA 71112 Query 133451 AAG-AAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCG 133509 | || | || ||||| || ||||| ||| || | |||| | || Sbjct 71113 GCGTAAGGCAGATTGGGCGCTTGCTTGGATTTCTTCGAAGTCGGCCAACTTTGGTGAACG 71172 Query 133510 TCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTT 133568 | | |||| ||||||| || || || ||||| |||||||| ||| ||| || || | Sbjct 71173 TGTAATTGCATTTGCTGCCGTTGAAGGTATTTTCTTCAGTGG-CAGTTTTGCTTCGATCT 71231 Query 133569 TTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAA 133628 | |||||||| || |||||| | | || || || ||||| || ||||| |||||| Sbjct 71232 TCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTTGACATTTTCCAATGAACTAATTTCAC 71291 Query 133629 GGGACGAGGCACTTCA 133644 | || |||| |||||| Sbjct 71292 GAGATGAGGGACTTCA 71307 >seq2 Length=5358759 Score = 100 bits (110), Expect = 8e-16 Identities = 223/333 (67%), Gaps = 4/333 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| ||||| || | | ||| || | || | || || |||| | Sbjct 1535151 CCAACCGCATCAATTTCATCAATAAACAAAATACATGGTGCATGCTTTCGAGCCATTGAA 1535210 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| || || || | || | ||||||| |||| || | ||| || ||| || Sbjct 1535211 AACATATCTCGAACCCGTGACGGACCTACACCAACAAACATCTCCAAAAACTCGGAACCG 1535270 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| || || | ||||||||||| || || |||| | || | | ||| || Sbjct 1535271 GATACACTTATAAAAGGAACATTTGCTTCACCAGCGGTTGCCTTTGCTAATAATGTTTTT 1535330 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 ||||| |||||||| || | | | | || ||||| | ||| || || | || Sbjct 1535331 CCTGTACCAGGTGGACCTGTGAGCATAGCACCTTTTGGAATTTTAGCGCCGAGATCAATA 1535390 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 || | | ||| | ||||| || | |||| |||| || ||| ||| || || ||| Sbjct 1535391 TACTGTTGAGGATTTTTTAAGAAGTTCACAAATTCCATAATTTCGATTTTGGCTTCCTCA 1535450 Query 289330 CATCCTGCTACAT--CAGCAAAA--GTAATATT 289358 || || || |||| | |||||| | |||||| Sbjct 1535451 CAACCCGCAACATCCCTGCAAAATTGCAATATT 1535483 >seq459 Length=871839 Score = 96.9 bits (106), Expect = 1e-14 Identities = 193/283 (68%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| || | |||||| |||||| | ||||| | ||| ||||||||| | | Sbjct 845189 AAATAGATCGCGTACACGTCTTGCTCCCTGGCCAACGAGTACTTCATCAAATTCAGGACC 845248 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | || | ||||| || ||||| ||||| || || || | || || || || || Sbjct 845249 AGCAGCATGGAAGAATGGAACGTTTGCCTCGCCAGCCACCGCACGTGCAAGTAGCGTTTT 845308 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || || ||||| ||||| ||||||| || || ||||| | ||| |||| || | | Sbjct 845309 GCCAGTACCAGGAGGTCCAACTAATAGCACACCTTTTGGCAATTTACCCCC--CAAATTG 845366 Query 289269 --ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | | || ||||| || || | |||||| || | || | | || | ||| |||||| Sbjct 845367 GAAAACTTTTCAGGACTTTTAAGAAATTCCACTACCTCTTTTAACTCTTGTTTAGCCTCA 845426 Query 289327 TCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369 |||||||| |||||| |||| || | || ||| || |||| Sbjct 845427 TCACATCCCTTAACATCATCAAATGTCACATGAATTTC-TTCT 845468 >seq2785 Length=1653263 Score = 84.2 bits (92), Expect = 6e-11 Identities = 121/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | | ||||| ||||| || ||||||||||| | ||||| |||||| || | Sbjct 1021794 GCACCATACGAAATCAAGCAATCGCGCTCCATTTCACCCAAACGCAAACCACCCTC--TC 1021737 Query 233333 GAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||| | ||| || | ||||| || | || | | ||||||| | ||||| || Sbjct 1021736 GACTGCGACCTTGTGTGGGCTGACGCGTCAGCACCGCTTTTGGACCACGTGCACGCGCAT 1021677 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACC 233439 |||||||||| ||||||||||||||| || |||||| |||||| Sbjct 1021676 GCATTTTATCTTGCACCATATGCTTCAGTTTCTGATAATACACCGGACC 1021628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471755256566122