Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq370 125 6e-24 seq603 86.0 5e-12 >seq370 Length=898501 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 ||||| || |||| ||||| ||||| | ||| || || | || || ||| || Sbjct 362088 GGCGGATTCTTCAAAATGAACGTGTTAACCTTGTGATTGACTTTTAAGAGACCATGAAAA 362029 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| |||||||| | || | || | | || ||||| || ||| | | || ||| Sbjct 362028 CCGCAAGCTTTGCATGCTTGCGAAATGGTTTGATTCTTAGCCGAGACGGTTAAATCGGTC 361969 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 ||||| ||||| |||||||| ||||| || || ||||| || |||||||| ||||| ||| Sbjct 361968 TCCGGATTGTCGCATTCCGGGCACAAGACGAATTTGCGTATAAAACCATCGAGCAGATCC 361909 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 || || || || ||||||||||| || || ||||| ||||| || Sbjct 361908 TGCAATTTGCTGGCATCGTGGGAGCCATTTACAATGAAACGTTCATT 361862 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||||| || | || ||||| ||||||| ||||| || || ||||| ||||| || | Sbjct 361780 TTGTAGTCAAATTGTGTTTGAGCGCCCAATTCGCAGCCAAAATACTTGGTCGGATAGGTA 361721 Query 34492 GCCGGACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 ||||||||||| | |||| | || | ||| | ||| || || || || || ||||||| Sbjct 361720 GCCGGACGTCCGATGGCGCGT--GCCACTTCAGCCATATTAACAATAACGGTTTTGATGC 361663 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 |||| || || || |||||||| || | ||| |||||||| || |||||||| || Sbjct 361662 CGTTACCTTTACCCTCGACCTTAGCTTGCAAGCGTGGCATTTTATAACGGTAGAAAATGT 361603 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | | ||||| || || || || || | ||||| Sbjct 361602 CGGTGACATTACGATTCACATTAACGGAACCCAT 361569 >seq603 Length=780983 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || || || || || ||||| ||||| || | || || || Sbjct 745567 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 745626 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||||| | | | || ||| |||||| ||||||||||| | ||| ||| Sbjct 745627 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 745686 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| |||||||| ||||| || | | || || | |||||| Sbjct 745687 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 745746 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || ||||| Sbjct 745747 AACATCCAGAAGGAGTCTAC 745766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412824965837858