Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq370 125 6e-24
seq603 86.0 5e-12
>seq370
Length=898501
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263
||||| || |||| ||||| ||||| | ||| || || | || || ||| ||
Sbjct 362088 GGCGGATTCTTCAAAATGAACGTGTTAACCTTGTGATTGACTTTTAAGAGACCATGAAAA 362029
Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323
||||| |||||||| | || | || | | || ||||| || ||| | | || |||
Sbjct 362028 CCGCAAGCTTTGCATGCTTGCGAAATGGTTTGATTCTTAGCCGAGACGGTTAAATCGGTC 361969
Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383
||||| ||||| |||||||| ||||| || || ||||| || |||||||| ||||| |||
Sbjct 361968 TCCGGATTGTCGCATTCCGGGCACAAGACGAATTTGCGTATAAAACCATCGAGCAGATCC 361909
Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430
|| || || || ||||||||||| || || ||||| ||||| ||
Sbjct 361908 TGCAATTTGCTGGCATCGTGGGAGCCATTTACAATGAAACGTTCATT 361862
Score = 114 bits (126), Expect = 1e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491
||||| || | || ||||| ||||||| ||||| || || ||||| ||||| || |
Sbjct 361780 TTGTAGTCAAATTGTGTTTGAGCGCCCAATTCGCAGCCAAAATACTTGGTCGGATAGGTA 361721
Query 34492 GCCGGACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549
||||||||||| | |||| | || | ||| | ||| || || || || || |||||||
Sbjct 361720 GCCGGACGTCCGATGGCGCGT--GCCACTTCAGCCATATTAACAATAACGGTTTTGATGC 361663
Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609
|||| || || || |||||||| || | ||| |||||||| || |||||||| ||
Sbjct 361662 CGTTACCTTTACCCTCGACCTTAGCTTGCAAGCGTGGCATTTTATAACGGTAGAAAATGT 361603
Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643
| | ||||| || || || || || | |||||
Sbjct 361602 CGGTGACATTACGATTCACATTAACGGAACCCAT 361569
>seq603
Length=780983
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
||||||||||| || || || || || || ||||| ||||| || | || || ||
Sbjct 745567 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 745626
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||||||| | | | || ||| |||||| ||||||||||| | ||| |||
Sbjct 745627 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 745686
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|||||| | | || | ||| |||||||| ||||| || | | || || | ||||||
Sbjct 745687 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 745746
Query 110450 AACATTCAAAAAGAATCTAC 110469
||||| || || || |||||
Sbjct 745747 AACATCCAGAAGGAGTCTAC 745766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412824965837858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |