Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq603 194 3e-44 seq2605 163 6e-35 seq1558 127 4e-24 seq2707 84.2 4e-11 >seq603 Length=780983 Score = 194 bits (214), Expect = 3e-44 Identities = 173/217 (80%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || || ||||| || ||||| || || ||||| || ||| | | || Sbjct 745785 ACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCC 745726 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| || |||||||||| | |||||||||||| || |||||||| || Sbjct 745725 GTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTT 745666 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||||||||| ||||| ||||| || |||| ||| || Sbjct 745665 GTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGAT 745606 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| ||||| ||||| || || || |||||| Sbjct 745605 GGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 745569 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || |||||||| || ||||| ||||| ||||| |||||||| || | Sbjct 746026 TACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGG 745967 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || | ||||| ||||| || || | | |||||||||||| | Sbjct 745966 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGG 745907 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| || ||||| ||||| ||||| ||||| ||| || | Sbjct 745906 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAA 745847 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || || || || ||||| || || || || |||||||| Sbjct 745846 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || || || ||||| ||||||||||| || || || Sbjct 747779 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 747720 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || ||||| || || ||||| || | | |||||||||||| || Sbjct 747719 AAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 747660 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||| ||||| || || ||||| ||||| ||||| || || ||| Sbjct 747659 ATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACT 747600 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| || | ||||| || || || ||||| Sbjct 747599 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || || |||||||| || || ||||| ||||| || || || || | Sbjct 747553 TACCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGG 747494 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || || || | ||| || || ||||| || | | |||||||||||| | Sbjct 747493 ACAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTG 747434 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||| || || ||||| ||||| ||||| || ||| || || | Sbjct 747433 GGATTCCTTCCTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAA 747374 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTT 82795 ||||||| || || || ||||| || | ||||| Sbjct 747373 CTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTT 747340 >seq2605 Length=276952 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| || ||||| |||| ||||| |||||||| |||||||| |||| Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | ||| ||||| ||||| ||||| | |||||||| || || Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || || |||| |||||| ||||| ||| || || Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| || || | || ||||| || || |||||| Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896 >seq1558 Length=2163639 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||||||| || || || || || || || || || || || || | Sbjct 2034176 TACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGG 2034117 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | ||| ||||| || ||||| | | ||||||||||| | Sbjct 2034116 ACAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGG 2034057 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || |||||||| || || ||||| |||||||| || || ||| ||| || | Sbjct 2034056 GGATGCCCTCTTTATCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGA 2033997 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || || ||||| || || || || || || || ||||||||| Sbjct 2033996 CCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATT 2033947 >seq2707 Length=1765650 Score = 84.2 bits (92), Expect = 4e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 198310 AACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAA 198369 || ||||| | || | |||||||| || |||||||| | |||||||| || | Sbjct 1307073 AATTCGAACAAGCAAATACACATGATGACCTCTGGAATGCTGCTCAAATACAACTGGTTC 1307132 Query 198370 GAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGA 198429 | ||||| |||||||| | ||| | | | ||| ||||||||||||||||| |||||| Sbjct 1307133 GTGAAGGCAAAATGCACGGATTTCTTCGTAAGTATTGGGCTAAAAAGATACTGGAATGGT 1307192 Query 198430 CAAGAACACCGGAAGACGCTTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTA 198488 | | |||| ||||| || | || || | || ||| ||||| | || || || Sbjct 1307193 CCAACTCACCAGAAGAGGCGCT-AGAAATTGCAATTTATTTAAACGACAAATATAGTTTA 1307251 Query 198489 GACGGCACGGATCCTAACGGATACGTAGGT 198518 || |||| ||| | ||||| || || ||| Sbjct 1307252 GATGGCAGAGATTCCAACGGTTATGTGGGT 1307281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981785611640734