Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq603 120 3e-22
seq2605 98.7 1e-15
seq1558 82.4 7e-11
>seq603
Length=780983
Score = 120 bits (132), Expect = 3e-22
Identities = 155/209 (74%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||||| ||||| || ||||| ||||| || ||| || ||| | | | ||||| |
Sbjct 746003 AAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCA-TCCTCCAA 745945
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| ||||| ||| |||| | || || || || || ||||| |||||||| || |||
Sbjct 745944 CTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT-TGAA 745886
Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| |||| || | ||||| || |||| ||||| || || | |||| |||||| |
Sbjct 745885 TTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTC 745826
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661
| |||| |||||| |||||||||||||||
Sbjct 745825 CCGTCAAAGTTTTGACGAAAATCTGCATG 745797
Score = 100 bits (110), Expect = 3e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAG 133513
||||| | || || || |||||||||||||| ||| || || | | | ||||| ||
Sbjct 747758 AAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCA-TCCTCAAG 747700
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||||| || |||| | || || || || || || |||||||| || || |||
Sbjct 747699 TTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGAT 747640
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | ||||| || || | |||||| || || | ||||| |||||||||
Sbjct 747639 CTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTTTTGCC 747580
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || ||||| || |||||
Sbjct 747579 AGTGAGGGTCTTAACGAAGATTTGCAT 747553
>seq2605
Length=276952
Score = 98.7 bits (108), Expect = 1e-15
Identities = 152/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || ||||||||||| ||||| || || ||| ||| ||| | || || |
Sbjct 242102 AAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCA-TCTTCCAA 242044
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||| || || |||| || ||||| || || || || || |||||||| || |||
Sbjct 242043 TTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCT-TGAA 241985
Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || | | | || |||| || || | ||||| || || | |||| ||| || |
Sbjct 241984 TTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTAC 241925
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
| || || |||||||||||||| ||||| |||
Sbjct 241924 CCGTAAGGGTTTTTACGAAAATTTGCATTGCT 241893
>seq1558
Length=2163639
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/208 (70%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | ||| ||||| || || || ||||| ||| || ||| ||| | || || |
Sbjct 2034153 AAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCTTCCAA 2034095
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||| || ||| | || | ||||| || || || |||||||| || || || |||
Sbjct 2034094 TTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCTTGGAT 2034035
Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| |||| || | || | ||||| | ||||| || || | ||| | ||| || |
Sbjct 2034034 -TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGTCTTAC 2033976
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| || | ||||| ||||||||||||||
Sbjct 2033975 CAGTTAAGGTTTTGACGAAAATCTGCAT 2033948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483400822635440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |