Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq603 120 3e-22 seq2605 98.7 1e-15 seq1558 82.4 7e-11 >seq603 Length=780983 Score = 120 bits (132), Expect = 3e-22 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| ||||| || ||||| ||||| || ||| || ||| | | | ||||| | Sbjct 746003 AAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCA-TCCTCCAA 745945 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| |||| | || || || || || ||||| |||||||| || ||| Sbjct 745944 CTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT-TGAA 745886 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||||| || |||| ||||| || || | |||| |||||| | Sbjct 745885 TTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTC 745826 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | |||| |||||| ||||||||||||||| Sbjct 745825 CCGTCAAAGTTTTGACGAAAATCTGCATG 745797 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAG 133513 ||||| | || || || |||||||||||||| ||| || || | | | ||||| || Sbjct 747758 AAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCCA-TCCTCAAG 747700 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || |||| | || || || || || || |||||||| || || ||| Sbjct 747699 TTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGAT 747640 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || || | |||||| || || | ||||| ||||||||| Sbjct 747639 CTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGATGGTTTTGCC 747580 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || ||||| Sbjct 747579 AGTGAGGGTCTTAACGAAGATTTGCAT 747553 >seq2605 Length=276952 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||||||||| ||||| || || ||| ||| ||| | || || | Sbjct 242102 AAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCA-TCTTCCAA 242044 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || |||| || ||||| || || || || || |||||||| || ||| Sbjct 242043 TTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCT-TGAA 241985 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || | | | || |||| || || | ||||| || || | |||| ||| || | Sbjct 241984 TTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTAC 241925 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | || || |||||||||||||| ||||| ||| Sbjct 241924 CCGTAAGGGTTTTTACGAAAATTTGCATTGCT 241893 >seq1558 Length=2163639 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||| || || || ||||| ||| || ||| ||| | || || | Sbjct 2034153 AAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCTTCCAA 2034095 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || | ||||| || || || |||||||| || || || ||| Sbjct 2034094 TTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCTTGGAT 2034035 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | || | ||||| | ||||| || || | ||| | ||| || | Sbjct 2034034 -TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGTCTTAC 2033976 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || | ||||| |||||||||||||| Sbjct 2033975 CAGTTAAGGTTTTGACGAAAATCTGCAT 2033948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483400822635440