Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq3107 206 6e-48
seq3007 87.8 4e-12
seq2829 87.8 4e-12
seq2774 87.8 4e-12
>seq3107
Length=1323484
Score = 206 bits (228), Expect = 6e-48
Identities = 577/871 (66%), Gaps = 37/871 (4%)
Strand=Plus/Minus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
||||||||||| ||||||||||||||| | ||||| || | |||||| | || ||
Sbjct 936246 TATTTTGGTTTTAAAACTCTTGAACGTTCCTATTTGCTAAAATTAAATGGCAAAATTGTT 936187
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|| || || || || ||||| | |||||||| || ||||| ||||| | || || |
Sbjct 936186 GAGCGACCACAGCATATGTTAATGCGTGTTGCCATCGGTATACATGGCGAAGACATAGAT 936127
Query 110424 GCTGTTATTGAATGTTATGA--TGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476
|| | || ||| || | || || | || | |||| |||||| |
Sbjct 936126 GCAGCAATCGAAACATACAACTTGCTTTCCG-------AACGTTATTTTACGCATGCTTC 936074
Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTTTCTTCTAG 110535
||| || ||||| || | || || | || |||||| | || |||||||| ||
Sbjct 936073 TCCAACGCTATTCGCTGCTGCCACCAA-GCAGCCGCAATTGTCATCATGCTTTCTACTGA 936015
Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATG-AT--GCTCTTAAAGAAACTGCTCTTA 110592
|| || ||||| ||||| || |||| || || | | || ||| | |
Sbjct 936014 CCATGGTGGACGATTCCATTGATGGGATTTTCACATCGGCACATCAATG---TGCATTGA 935958
Query 110593 TTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA---G 110649
|||| ||| |||| || |||||| | |||| ||| || || ||||||| |
Sbjct 935957 TTTCCAAATCTGCTGGGGGTATTGGTCTGAACGTACATTGCATACGTGCAAAAGGCACTG 935898
Query 110650 CAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCA 110709
||| | | ||| || || | |||| || | || || ||||| |||| ||||
Sbjct 935897 CAATTGCGGGTACA---AATGGCACATCAAACGGTTTGGTGCCTATGTTGCGAGTGTTCA 935841
Query 110710 ACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCT 110766
| | ||| |||||| |||||||||| ||| | ||| ||||||| ||||
Sbjct 935840 ATAATGTAGCACGCTATGTGGATCAAGGTGGCGGTAAACGTCCAGGCGCATTTGCCATCT 935781
Query 110767 ATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA-AAAATCAA-GG 110824
| || ||||| |||||| | ||||| || |||| || || || | | |||| || ||
Sbjct 935780 ACCTGGAACCATGGCATGCTGATATTTTCCAATTTTTGGA--TTTGAAGAAAAACACTGG 935723
Query 110825 ATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCAT 110884
||||| || | || | ||||| |||||||| ||||||| | ||| |||| ||
Sbjct 935722 GAAAGAAGAGCATCGCGCCAGAGATTTGTTTTATGCTTTGTGGATACCTGATCTATTTAT 935663
Query 110885 GAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCT 110944
||||||||| ||| |||| ||||| || |||||||| || | ||| |||||
Sbjct 935662 GAAACGTGTAGAAGCCAATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCCCGGTCT 935603
Query 110945 ATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAA 111004
| ||| |||| || ||||||| ||| | | || ||||||||| | ||||| |
Sbjct 935602 ACATGAAGTATGGGGTGAAGAGTTCGAAAAATTATATCTGAAATATGAACAGGAAGG-AC 935544
Query 111005 GTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTG 111063
|| || ||| | | || ||| |||||||| | || ||||||| ||||| |
Sbjct 935543 GTGCTAATAAGAAAGTAAAAGCACAAAGTCTTTGGTTTAGCATTATTGAATCGCAAGTGG 935484
Query 111064 AAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGA 111123
| || || || || || || |||||||||||| | |||||| || ||||||| ||
Sbjct 935483 AGACCGGCACACCATACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCAACAGA 935424
Query 111124 ATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154
|| | || |||||||||| ||||||||| ||
Sbjct 935423 ATGTTGGTACAATTAAGTGTAGTAATTTATG 935393
>seq3007
Length=1367349
Score = 87.8 bits (96), Expect = 4e-12
Identities = 125/173 (72%), Gaps = 6/173 (3%)
Strand=Plus/Minus
Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377
||| | ||| |||| | |||||| | || ||| | || ||||||||| ||||||||
Sbjct 217200 GACGACGATCTGGTTATTTTCAATCGTCAGCCAACGCTACATAAAATGAGTATGATGGGG 217141
Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA---CG 305434
||| ||||||||||| || | | ||||| || | || | || |||||| |
Sbjct 217140 CATCGTGTCAAAGTATTGCCTTGGTCTACATTCCGTATGAACTT--GT-CTTGTACTTCA 217084
Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487
|| || || || ||||| || |||||||||||||| |||| ||||| |||||
Sbjct 217083 CCCTACAACGCTGATTTCGACGGAGATGAAATGAACTTGCACGTACCGCAATC 217031
>seq2829
Length=1617252
Score = 87.8 bits (96), Expect = 4e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
|| || |||||| | ||||||||||| ||||||||||| || ||| ||| ||| ||
Sbjct 1384962 GTGCTTTTCAATCGCCAACCATCACTACATAAAATGTCGATTATGTGTCACCAAGCTAAG 1384903
Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449
|| | | ||||| || || || | ||||||||||||| ||||| || |||
Sbjct 1384902 GTGCAGCCACAACGTACATTCCGTTTCAACGAGTGTGCTTGTACGCCATATAACGCAGAT 1384843
Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492
|| || || |||||||||||| | || | || ||| || |||
Sbjct 1384842 TTCGACGGCGATGAAATGAATTTACACTTGCCACAAACAGAGG 1384800
>seq2774
Length=1624295
Score = 87.8 bits (96), Expect = 4e-12
Identities = 122/170 (72%), Gaps = 6/170 (4%)
Strand=Plus/Minus
Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377
|| || |||| ||| | || || | |||||| | ||||| |||||||| ||||||| |
Sbjct 1051165 GATAACGATTTGGTGATCTTTAACCGCCAACCAACGCTGCACAAAATGTCGATGATGGGT 1051106
Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTAC---G 305434
|| ||||||||| | || | | ||||| || | || | ||||||| |
Sbjct 1051105 CACCGCGTCAAAGTACTGCCTTGGTCCACATTCCGGATGAACCTCT---CTTGTACCTCG 1051049
Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484
|| ||||| || ||||| ||||| |||||||||||| | ||||| |||||
Sbjct 1051048 CCCTATAACGCCGATTTCGATGGCGATGAAATGAATTTACATGTTCCTCA 1050999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186762528835066
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |