Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3107 206 6e-48 seq3007 87.8 4e-12 seq2829 87.8 4e-12 seq2774 87.8 4e-12 >seq3107 Length=1323484 Score = 206 bits (228), Expect = 6e-48 Identities = 577/871 (66%), Gaps = 37/871 (4%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||| ||||||||||||||| | ||||| || | |||||| | || || Sbjct 936246 TATTTTGGTTTTAAAACTCTTGAACGTTCCTATTTGCTAAAATTAAATGGCAAAATTGTT 936187 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || || || || || ||||| | |||||||| || ||||| ||||| | || || | Sbjct 936186 GAGCGACCACAGCATATGTTAATGCGTGTTGCCATCGGTATACATGGCGAAGACATAGAT 936127 Query 110424 GCTGTTATTGAATGTTATGA--TGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476 || | || ||| || | || || | || | |||| |||||| | Sbjct 936126 GCAGCAATCGAAACATACAACTTGCTTTCCG-------AACGTTATTTTACGCATGCTTC 936074 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTTTCTTCTAG 110535 ||| || ||||| || | || || | || |||||| | || |||||||| || Sbjct 936073 TCCAACGCTATTCGCTGCTGCCACCAA-GCAGCCGCAATTGTCATCATGCTTTCTACTGA 936015 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATG-AT--GCTCTTAAAGAAACTGCTCTTA 110592 || || ||||| ||||| || |||| || || | | || ||| | | Sbjct 936014 CCATGGTGGACGATTCCATTGATGGGATTTTCACATCGGCACATCAATG---TGCATTGA 935958 Query 110593 TTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA---G 110649 |||| ||| |||| || |||||| | |||| ||| || || ||||||| | Sbjct 935957 TTTCCAAATCTGCTGGGGGTATTGGTCTGAACGTACATTGCATACGTGCAAAAGGCACTG 935898 Query 110650 CAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCA 110709 ||| | | ||| || || | |||| || | || || ||||| |||| |||| Sbjct 935897 CAATTGCGGGTACA---AATGGCACATCAAACGGTTTGGTGCCTATGTTGCGAGTGTTCA 935841 Query 110710 ACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCT 110766 | | ||| |||||| |||||||||| ||| | ||| ||||||| |||| Sbjct 935840 ATAATGTAGCACGCTATGTGGATCAAGGTGGCGGTAAACGTCCAGGCGCATTTGCCATCT 935781 Query 110767 ATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA-AAAATCAA-GG 110824 | || ||||| |||||| | ||||| || |||| || || || | | |||| || || Sbjct 935780 ACCTGGAACCATGGCATGCTGATATTTTCCAATTTTTGGA--TTTGAAGAAAAACACTGG 935723 Query 110825 ATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCAT 110884 ||||| || | || | ||||| |||||||| ||||||| | ||| |||| || Sbjct 935722 GAAAGAAGAGCATCGCGCCAGAGATTTGTTTTATGCTTTGTGGATACCTGATCTATTTAT 935663 Query 110885 GAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCT 110944 ||||||||| ||| |||| ||||| || |||||||| || | ||| ||||| Sbjct 935662 GAAACGTGTAGAAGCCAATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCCCGGTCT 935603 Query 110945 ATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAA 111004 | ||| |||| || ||||||| ||| | | || ||||||||| | ||||| | Sbjct 935602 ACATGAAGTATGGGGTGAAGAGTTCGAAAAATTATATCTGAAATATGAACAGGAAGG-AC 935544 Query 111005 GTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTG 111063 || || ||| | | || ||| |||||||| | || ||||||| ||||| | Sbjct 935543 GTGCTAATAAGAAAGTAAAAGCACAAAGTCTTTGGTTTAGCATTATTGAATCGCAAGTGG 935484 Query 111064 AAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGA 111123 | || || || || || || |||||||||||| | |||||| || ||||||| || Sbjct 935483 AGACCGGCACACCATACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCAACAGA 935424 Query 111124 ATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 || | || |||||||||| ||||||||| || Sbjct 935423 ATGTTGGTACAATTAAGTGTAGTAATTTATG 935393 >seq3007 Length=1367349 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 ||| | ||| |||| | |||||| | || ||| | || ||||||||| |||||||| Sbjct 217200 GACGACGATCTGGTTATTTTCAATCGTCAGCCAACGCTACATAAAATGAGTATGATGGGG 217141 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTA---CG 305434 ||| ||||||||||| || | | ||||| || | || | || |||||| | Sbjct 217140 CATCGTGTCAAAGTATTGCCTTGGTCTACATTCCGTATGAACTT--GT-CTTGTACTTCA 217084 Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 || || || || ||||| || |||||||||||||| |||| ||||| ||||| Sbjct 217083 CCCTACAACGCTGATTTCGACGGAGATGAAATGAACTTGCACGTACCGCAATC 217031 >seq2829 Length=1617252 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||||||||| ||||||||||| || ||| ||| ||| || Sbjct 1384962 GTGCTTTTCAATCGCCAACCATCACTACATAAAATGTCGATTATGTGTCACCAAGCTAAG 1384903 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | ||||| || || || | ||||||||||||| ||||| || ||| Sbjct 1384902 GTGCAGCCACAACGTACATTCCGTTTCAACGAGTGTGCTTGTACGCCATATAACGCAGAT 1384843 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 || || || |||||||||||| | || | || ||| || ||| Sbjct 1384842 TTCGACGGCGATGAAATGAATTTACACTTGCCACAAACAGAGG 1384800 >seq2774 Length=1624295 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || || |||| ||| | || || | |||||| | ||||| |||||||| ||||||| | Sbjct 1051165 GATAACGATTTGGTGATCTTTAACCGCCAACCAACGCTGCACAAAATGTCGATGATGGGT 1051106 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTAC---G 305434 || ||||||||| | || | | ||||| || | || | ||||||| | Sbjct 1051105 CACCGCGTCAAAGTACTGCCTTGGTCCACATTCCGGATGAACCTCT---CTTGTACCTCG 1051049 Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || ||||| || ||||| ||||| |||||||||||| | ||||| ||||| Sbjct 1051048 CCCTATAACGCCGATTTCGATGGCGATGAAATGAATTTACATGTTCCTCA 1050999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186762528835066