Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq603 125 5e-24
seq1558 113 3e-20
seq2605 89.7 3e-13
>seq603
Length=780983
Score = 125 bits (138), Expect = 5e-24
Identities = 174/240 (73%), Gaps = 4/240 (2%)
Strand=Plus/Minus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || ||||| | | ||| | |||||||| || || ||| || || |||
Sbjct 745808 AAAATCTGCATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATG 745749
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
||||||||||| || |||||| |||| |||| |||||| |||||||| || ||||| ||
Sbjct 745748 TTGTAATCGGACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGT 745689
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|||||| | || | ||||||||||| ||| || | || ||||| || | || ||
Sbjct 745688 TGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTT-AGCTTTAACATTTTCAATAGTATC 745630
Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || ||| || || | ||||| || || || || || || || || ||||| |||||
Sbjct 745629 GGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 745570
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || |||| || |||||||||||| || || || || || || |||||
Sbjct 746025 ACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGA 745966
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||||||| | || ||||| ||||| || || ||||||||||| || |||||| | ||
Sbjct 745965 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGG 745906
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || |||||| | || |||| || | ||| ||| | || |
Sbjct 745905 GATTCCTTCCTTATCTTGAATTTT-AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAA 745847
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| ||||| || || || ||||| || || ||||||||
Sbjct 745846 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798
Score = 89.7 bits (98), Expect = 3e-13
Identities = 152/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||||| ||||||||| || || || || ||||| ||||| ||||| | || ||| |
Sbjct 747768 ACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCC 747709
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| || | ||| || ||||||||||||||||| || |||||| | || | ||||||||
Sbjct 747708 ATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTT 747649
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
|| || || | | ||||| || | ||| || | || || || | ||||
Sbjct 747648 ATCTTGGATCTT-AGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGA 747590
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| ||||| || || | || || || ||||| ||||||
Sbjct 747589 TGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCATA 747552
Score = 84.2 bits (92), Expect = 1e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | ||| || | || || || || || || || || |||||||| |||||
Sbjct 747552 ACCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGA 747493
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || ||| | || |||||||| || ||||||||||||||||| || |||||| | ||
Sbjct 747492 CAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGG 747433
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || ||||| | || |||| || | |||||| || || |
Sbjct 747432 GATTCCTTCCTTATCTTGGATTTT-GGCTTTGACATTCTCAATGGTGTCAGATGGCTCAA 747374
Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725
| || | ||||| ||||| || ||
Sbjct 747373 CTTCCAAGGTGATGGTTTTGCCAGT 747349
>seq1558
Length=2163639
Score = 113 bits (124), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||||| || || ||| ||||| |||||||| |||||
Sbjct 2034175 ACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGA 2034116
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| | || |||||||| |||||||| || ||||||||||| |||||| | ||
Sbjct 2034115 CAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGG 2034056
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || ||||| || ||||| | || |||| || | |||||| | || |
Sbjct 2034055 GATGCCCTCTTTATCTTGGATTTT-AGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGA 2033997
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | || || || ||||| ||||| ||||| || || ||||||||
Sbjct 2033996 CCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948
>seq2605
Length=276952
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | || ||||| | || |||||| || || || || || |
Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| |||||| | || |||||||| |||||||||||||| | |||||| ||||| | ||
Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| || || |||||| | | ||||| || | || || | || ||
Sbjct 242003 ATTCCTTCCTTATCTTGAATTTT-GGCCTTAACATGTTCAATAGTATCCGAAGGCTCAAC 241945
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || ||||| || | |||||||| || || |||||
Sbjct 241944 CTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328690755899520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |