Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq603 125 5e-24 seq1558 113 3e-20 seq2605 89.7 3e-13 >seq603 Length=780983 Score = 125 bits (138), Expect = 5e-24 Identities = 174/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | |||||||| || || ||| || || ||| Sbjct 745808 AAAATCTGCATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATG 745749 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||||||||| || |||||| |||| |||| |||||| |||||||| || ||||| || Sbjct 745748 TTGTAATCGGACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGT 745689 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | ||||||||||| ||| || | || ||||| || | || || Sbjct 745688 TGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTT-AGCTTTAACATTTTCAATAGTATC 745630 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||| || || | ||||| || || || || || || || || ||||| ||||| Sbjct 745629 GGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 745570 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || |||| || |||||||||||| || || || || || || ||||| Sbjct 746025 ACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGA 745966 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || ||||| ||||| || || ||||||||||| || |||||| | || Sbjct 745965 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGG 745906 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| | || |||| || | ||| ||| | || | Sbjct 745905 GATTCCTTCCTTATCTTGAATTTT-AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAA 745847 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || || ||||| || || |||||||| Sbjct 745846 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||| ||||||||| || || || || ||||| ||||| ||||| | || ||| | Sbjct 747768 ACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTACGTCC 747709 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || || | ||| || ||||||||||||||||| || |||||| | || | |||||||| Sbjct 747708 ATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCTTT 747649 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || || || | | ||||| || | ||| || | || || || | |||| Sbjct 747648 ATCTTGGATCTT-AGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAGGTGA 747590 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||||| || || | || || || ||||| |||||| Sbjct 747589 TGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCATA 747552 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| || | || || || || || || || || |||||||| ||||| Sbjct 747552 ACCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGA 747493 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || |||||||| || ||||||||||||||||| || |||||| | || Sbjct 747492 CAAGGTACGTCCATCCTCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGG 747433 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||||| | || |||| || | |||||| || || | Sbjct 747432 GATTCCTTCCTTATCTTGGATTTT-GGCTTTGACATTCTCAATGGTGTCAGATGGCTCAA 747374 Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725 | || | ||||| ||||| || || Sbjct 747373 CTTCCAAGGTGATGGTTTTGCCAGT 747349 >seq1558 Length=2163639 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| || || ||| ||||| |||||||| ||||| Sbjct 2034175 ACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGA 2034116 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || |||||||| |||||||| || ||||||||||| |||||| | || Sbjct 2034115 CAAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGG 2034056 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || ||||| | || |||| || | |||||| | || | Sbjct 2034055 GATGCCCTCTTTATCTTGGATTTT-AGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGA 2033997 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || ||||| ||||| ||||| || || |||||||| Sbjct 2033996 CCTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948 >seq2605 Length=276952 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | || ||||| | || |||||| || || || || || | Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||||||| |||||||||||||| | |||||| ||||| | || Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | | ||||| || | || || | || || Sbjct 242003 ATTCCTTCCTTATCTTGAATTTT-GGCCTTAACATGTTCAATAGTATCCGAAGGCTCAAC 241945 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| || | |||||||| || || ||||| Sbjct 241944 CTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328690755899520