Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 102 2e-16
seq603 102 2e-16
seq2605 89.7 1e-12
>seq1558
Length=2163639
Score = 102 bits (112), Expect = 2e-16
Identities = 165/231 (71%), Gaps = 11/231 (5%)
Strand=Plus/Plus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| || |||||| | || || || || || || || || || ||
Sbjct 2033945 AAAATG---CAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAG 2034001
Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282
||||||||| ||||| || ||||| ||| || ||||| ||||| || || ||
Sbjct 2034002 CCTTCTGACACCATCGAAAATGTCAAAGCTAAA-ATCCAAGATAAAGAGGGCATCCCCCC 2034060
Query 206283 GGACGCTCAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339
|| |||| || || ||||||||||||||||| ||||||||||| | || ||| |
Sbjct 2034061 AGA---TCAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTC 2034117
Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||| |||||| |||| || ||||| || || || | ||| || | |||||
Sbjct 2034118 CGACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCG 2034168
>seq603
Length=780983
Score = 102 bits (112), Expect = 2e-16
Identities = 132/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252
|| || || || |||||| |||| || ||| || || || | ||| || |||||
Sbjct 745594 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCT 745653
Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312
|| ||||||||| ||||||||||| || || ||| | | ||||| ||||| ||
Sbjct 745654 AA-GATTCAAGACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAA 745712
Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|| ||||||| ||| | ||| || ||||||||||| ||||||| |||||||| |||||
Sbjct 745713 ACAACTGGAAGACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCA 745772
Score = 86.0 bits (94), Expect = 1e-11
Identities = 141/201 (70%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| | || |||||||| ||||||||||| || || ||| ||
Sbjct 745801 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 745860
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| | || || ||||| ||| |||||||| || |||||||| || || ||
Sbjct 745861 ACCATTGAGAATGTCAAAGCTAAA-ATTCAAGATAAGGAAGGAATCCCCCCAGATCAACA 745919
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | | || ||||| || || |||||||| |||||| | || || |||| || || |
Sbjct 745920 ACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAATAT 745979
Query 206352 CCAGAAAGAGTCTACTCTTCA 206372
||||| || || ||||| ||
Sbjct 745980 TCAGAAGGAATCCACTCTACA 746000
>seq2605
Length=276952
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || |||||| | || || || ||| || || | |||
Sbjct 241912 AAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCGGATACTATTGAACAT 241971
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || |||||||| || ||||||||| || || || | || || ||
Sbjct 241972 GTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCTGATCAACAGCGTCTAATTTTT 242031
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||||||||| ||||||||||| | || ||||| || || || | ||||||||||||
Sbjct 242032 GCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAATATTCAGAAAGAGTCT 242091
Query 206365 AC 206366
||
Sbjct 242092 AC 242093
Score = 87.8 bits (96), Expect = 4e-12
Identities = 68/81 (84%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835
|||||||||||||| | ||||||||||||||| || | |||||||||| |||||||||
Sbjct 242093 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 242034
Query 204836 GCGAAGATAAGCCGTTGTTGA 204856
|| || || || || ||||||
Sbjct 242033 GCAAAAATTAGACGCTGTTGA 242013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181770740286826
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |