Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1558 102 2e-16 seq603 102 2e-16 seq2605 89.7 1e-12 >seq1558 Length=2163639 Score = 102 bits (112), Expect = 2e-16 Identities = 165/231 (71%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || |||||| | || || || || || || || || || || Sbjct 2033945 AAAATG---CAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAG 2034001 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||||||||| ||||| || ||||| ||| || ||||| ||||| || || || Sbjct 2034002 CCTTCTGACACCATCGAAAATGTCAAAGCTAAA-ATCCAAGATAAAGAGGGCATCCCCCC 2034060 Query 206283 GGACGCTCAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 || |||| || || ||||||||||||||||| ||||||||||| | || ||| | Sbjct 2034061 AGA---TCAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTC 2034117 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| |||||| |||| || ||||| || || || | ||| || | ||||| Sbjct 2034118 CGACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCG 2034168 >seq603 Length=780983 Score = 102 bits (112), Expect = 2e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || |||||| |||| || ||| || || || | ||| || ||||| Sbjct 745594 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCT 745653 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||||||||| ||||||||||| || || ||| | | ||||| ||||| || Sbjct 745654 AA-GATTCAAGACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAA 745712 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||| ||| | ||| || ||||||||||| ||||||| |||||||| ||||| Sbjct 745713 ACAACTGGAAGACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCA 745772 Score = 86.0 bits (94), Expect = 1e-11 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || |||||||| ||||||||||| || || ||| || Sbjct 745801 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 745860 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| |||||||| || |||||||| || || || Sbjct 745861 ACCATTGAGAATGTCAAAGCTAAA-ATTCAAGATAAGGAAGGAATCCCCCCAGATCAACA 745919 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || ||||| || || |||||||| |||||| | || || |||| || || | Sbjct 745920 ACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAATAT 745979 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 ||||| || || ||||| || Sbjct 745980 TCAGAAGGAATCCACTCTACA 746000 >seq2605 Length=276952 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || || ||| || || | ||| Sbjct 241912 AAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCGGATACTATTGAACAT 241971 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||||||| || || || | || || || Sbjct 241972 GTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCTGATCAACAGCGTCTAATTTTT 242031 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| ||||||||||| | || ||||| || || || | |||||||||||| Sbjct 242032 GCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAATATTCAGAAAGAGTCT 242091 Query 206365 AC 206366 || Sbjct 242092 AC 242093 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835 |||||||||||||| | ||||||||||||||| || | |||||||||| ||||||||| Sbjct 242093 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 242034 Query 204836 GCGAAGATAAGCCGTTGTTGA 204856 || || || || || |||||| Sbjct 242033 GCAAAAATTAGACGCTGTTGA 242013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181770740286826