Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1359 105 2e-19 seq3196 102 3e-18 seq1891 102 3e-18 seq3118 98.7 3e-17 >seq1359 Length=521599 Score = 105 bits (116), Expect = 2e-19 Identities = 82/96 (85%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 2749 ATCTTTGTACT---GTGTTTA-TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAA 2804 |||| |||||| ||||| | | || ||| |||||||||||||||||| |||||||||| Sbjct 296383 ATCTCTGTACTAAAGTGTTAAATTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAA 296442 Query 2805 GATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 |||||||||||||| ||||||| |||||| ||| || Sbjct 296443 GATCTAAAGGTCCCCGGTTCAATCCCGGGTTTCGGC 296478 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 273274 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 273215 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 273214 CCGGGTTTCGGC 273203 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 296834 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 296775 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 296774 CCGGGTTTCGGC 296763 >seq3196 Length=1279079 Score = 102 bits (112), Expect = 3e-18 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 2754 TGTACTGTGTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAA 2812 |||| | | | |||| || ||| |||||||||||||||||| |||||||||||||||||| Sbjct 309153 TGTATTATTTGTATGCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAA 309212 Query 2813 GGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 |||||| ||||||| |||||| ||| || Sbjct 309213 GGTCCCCGGTTCAATCCCGGGTTTCGGC 309240 >seq1891 Length=2127504 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1292040 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTC 1291981 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 1291980 AATCCCGGGTTTCGGC 1291965 Score = 102 bits (112), Expect = 3e-18 Identities = 71/80 (89%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 2763 TTTATG--GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 |||||| || ||| |||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1292392 TTTATGCAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCG 1292333 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 |||||| |||||| ||| || Sbjct 1292332 GTTCAATCCCGGGTTTCGGC 1292313 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 1289814 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 1289873 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1289874 CCGGGTTTCGGC 1289885 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 1293505 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 1293446 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1293445 CCGGGTTTCGGC 1293434 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 1296668 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 1296727 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1296728 CCGGGTTTCGGC 1296739 >seq3118 Length=1371452 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 492574 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 492515 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 492514 CCGGGTTTCGGC 492503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849026888370