Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3107 576 2e-159 seq2718 266 4e-66 >seq3107 Length=1323484 Score = 576 bits (638), Expect = 2e-159 Identities = 1248/1853 (67%), Gaps = 32/1853 (2%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||||| ||||| | ||| ||||| || || || |||||| |||| ||| ||||| Sbjct 934448 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAA 934507 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || ||| || || || ||| | || || || | || || || | ||| |||||| Sbjct 934508 TGTATAGAAGTAAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTT 934567 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGG--AATTT 68572 ||||||||||| || || | |||||| |||||||| || | | |||| | | ||| | Sbjct 934568 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTGAT--TGATGTTTTCACGGAAATCT 934625 Query 68573 CCCAAATAGTCTT--AAAAATC---TGTTTGATATCATCTGGAAGGCTCG-TATTTTGAA 68626 |||||| ||| || | | ||| | | || | | | |||| || ||||||| | Sbjct 934626 CCCAAACAGTTTTGTATAGATCGCGTATGTGCTGTGGTATGGAT---TCAATATTTTGTA 934682 Query 68627 TGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCG 68686 |||| || | | || |||||| ||||||| || ||||||| |||||| ||| | Sbjct 934683 TGGAGCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAAACCCAACTCGG 934742 Query 68687 TTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAG 68746 ||| | | | | | || |||| || | ||||||||| || || | ||| | ||| | Sbjct 934743 TTAGATCGCGCAACAAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTG 934802 Query 68747 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTG 68806 | |||||||| || |||||||| | || ||||| || |||| |||||| || |||| Sbjct 934803 TATAAATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTG 934862 Query 68807 ATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTAT 68866 | ||||||||||| || || | || |||| || | | ||||||| | ||||| | Sbjct 934863 AAGCAGTTGGCATGGGCGCAAGCAGTAAAGAGTTGCGGACACCATGTTGCTTTATTTTCT 934922 Query 68867 CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTA 68926 | || | | |||||| ||||||||||| |||| || ||| | || || |||| Sbjct 934923 CCTTCAATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTA 934982 Query 68927 GAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 |||| || ||||| | ||| || | || |||||||| || || | ||| |||| Sbjct 934983 GAATACCCTTACTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCTA 935042 Query 68987 GTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 69046 ||| ||||| || || || || || || |||||||||||||| || | || ||| | | Sbjct 935043 ATTCGCAACTAGCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAAA 935102 Query 69047 CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCT 69106 | ||||||| ||| ||| |||||||| | | | ||| || || || || || |||| Sbjct 935103 GTAATGCTTCTTCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCCT 935162 Query 69107 GAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTC--AGCTTCTGGAATAGG 69164 | || ||||||||||| || | |||||| ||| || |||| || || || | || Sbjct 935163 GTACTCCAATACCGATGGGACGATGTCTGAAATTCGA--TTTCCTTGCCTCCGGTAAGGG 935220 Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTT 69224 ||||| |||||| ||||| |||||||| | ||| || || ||| || || || Sbjct 935221 ATAATGATTAATGTCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTCTTT 935280 Query 69225 TAGTTTGAGAAAATCAAA---TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGC 69281 || ||| || | | | | | | ||||||||||||| || | || || Sbjct 935281 GAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGACAAACATATTCAACGCGATTGAAGC 935340 Query 69282 TAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATT 69341 | || || || |||||||||| || || ||||| | || || ||||||| ||| Sbjct 935341 CAAGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCGGTACATAAATT 935400 Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401 |||||| || || || || | ||| || |||||||||||| ||||| || || || || Sbjct 935401 ACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATA 935460 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT 69461 | || | || || || || || | || ||||| ||||| | | | || ||| | Sbjct 935461 CAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAAGACTTT 935519 Query 69462 AGCATTTATTACGGTCTT-GTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGTTC 69518 || |||| |||| || | | || || | |||||||| ||||| ||| Sbjct 935520 GTGCTT--TTACTTTCTTATTAGCACGTCCTTCCTGTTCATATTTCAGATATAATTTTTC 935577 Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578 ||| || || ||||| || |||| | || ||||| | | ||||||||| | ||||| Sbjct 935578 GAACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATTAGCGACCA 935637 Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638 | |||| | | || ||||||||||||||||| || ||||| | ||| ||| | Sbjct 935638 GTCTTCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGCATAAAACAA 935697 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 |||||||| | || ||||| || || || ||||| || | ||| | ||| | | ||| Sbjct 935698 ATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAATTGGAAAAT 935757 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTG 69758 ||||| |||||||||||| || || || || | | || || |||||| || || || Sbjct 935758 ATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCGCCACCTTG 935817 Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTT 69818 ||| | || | || ||||| | |||| || ||| || | | ||| || ||| | Sbjct 935818 ATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACCGTTTGATGT 935877 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878 |||||||| || | ||| | | ||| |||| || || | | ||||| || Sbjct 935878 GCCATTTGTACCCGCAATTGCAGTGCCTTTTGCACGTATGCAATGTACGTTCAGACCAAT 935937 Query 69879 TCCTCCTGCCATTTTAGAGATTAGAGCACA---ACGTTTCAATGTGTCATATATACCCTC 69935 || || || ||| || || | ||||| | || | ||||| | || || || Sbjct 935938 ACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGTG---AAAATCCCATC 935994 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 ||| ||| || | |||| | || ||||| || |||| ||| | || | || | Sbjct 935995 AATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCTGCTTGGTGGC 936054 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 ||| |||| || ||||| || || || || | ||| ||||||| |||||||| Sbjct 936055 AGCAGCGAATAGCGTTGGAGAAGCATGCGTAAAATAACGTTCGGAAAGCAAGTTGTATGT 936114 Query 70056 TTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 ||| || |||| ||||| || ||| || || || || |||||||| |||||||| Sbjct 936115 TTCGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACGCATTAACATATG 936174 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 ||| ||||| || || |||| ||||| ||| | || || || ||| |||||||| Sbjct 936175 CTGTGGTCGCTCAACAATTTTGCCATTTAATTTTAGCAAATAGGAACGTTCAAGAGTTTT 936234 Query 70176 AAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 ||| |||||||| || || ||| || | || |||||||| |||| |||| Sbjct 936235 AAAACCAAAATAATTATAACCAAAATCGCGGTCATAAATAATGGCAGAGTTTA 936287 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 ||||| |||||| ||||| || || ||||||||||| ||||| | || || | | || Sbjct 936498 AAATACTTTTTTAGTTTCTTTATGCAAATTTGATATAGCTATGCGAGCAGCCAATGTTGC 936557 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 |||||| | ||||||||| ||| | | || |||||||| ||||| || |||| | || Sbjct 936558 ATAGTCGGCATGTTGTGTTGTAAGACTTGCAGCTATTTCAGCAGCCAAGTTATCAAGCTC 936617 Query 70458 TATAGTTGTAACTCC 70472 | || || ||||| Sbjct 936618 TTGTGTGGTGACTCC 936632 >seq2718 Length=1670031 Score = 266 bits (294), Expect = 4e-66 Identities = 489/713 (69%), Gaps = 9/713 (1%) Strand=Plus/Minus Query 39442 AATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT 39501 || ||| | ||| || |||||||| || || ||| | || |||||||| || || Sbjct 71497 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 71438 Query 39502 GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTAT 39561 || || || || | ||| || |||| || || | || || | || || || | || Sbjct 71437 TAGATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 71378 Query 39562 TAT--CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAG 39619 ||| | | ||| ||||| ||| ||| || | |||||||| ||||| || || Sbjct 71377 TATTTCAACAATACG--CTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 71320 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 |||||||||||||| || |||||||||| ||||| ||| || |||||||| | || Sbjct 71319 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 71260 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||||| |||||| || || ||||| || || | ||||||| ||| ||||| || Sbjct 71259 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATA 71200 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA----T 39795 ||||| || || |||||||||| | | || || || ||| | | | | | Sbjct 71199 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCA-AAGTTGGCCGACTTCGAAGAAAT 71141 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| | |||||||| || || |||||| ||||||||| ||||||||||| || Sbjct 71140 CCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAA 71081 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 | ||| ||| | || |||| ||||||||| ||||| | ||||||||||| Sbjct 71080 TAAGCAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTC 71021 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 ||||| | || || ||||| || |||||||| || || || | ||| || || | ||| Sbjct 71020 AGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTG 70961 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 || || || || | ||| | | |||||||||||| || |||||| ||||| || Sbjct 70960 GACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAA 70901 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095 ||| || || || || |||||||| | ||||| || | ||| |||| Sbjct 70900 AAAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATC 70841 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||||||| || | ||||||||| || ||||||| ||||| || ||||||| Sbjct 70840 CATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686880413493840