Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq314 179 3e-40
seq2718 167 2e-36
seq669 113 4e-20
>seq314
Length=932230
Score = 179 bits (198), Expect = 3e-40
Identities = 391/577 (68%), Gaps = 10/577 (2%)
Strand=Plus/Minus
Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913
|||||||| ||||||||||| || || |||||||| ||||||| ||| |||||||| ||
Sbjct 384486 GATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCC 384427
Query 40914 AAATAT-GACACT--ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC 40970
|| || || ||| | | || | || | || | || || |||||| | |||
Sbjct 384426 AAGTACAGAAACTGCAAGGACAGT---TACAAAGATGAGGGTATAGATCAACTTCAGCAA 384370
Query 40971 GTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAAC 41030
|| || || || || | | |||| || |||||||| ||| ||| || |||||
Sbjct 384369 GTAATTGACACTATCAGAAATAATCCAAATGATCGACGTATTATAATGTCTGCTTGGAAT 384310
Query 41031 CCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGT 41089
|| || | | | ||||| | ||||||||||||| || || || |||| ||
Sbjct 384309 CCTGTCGATATCCCTCAAATGGCGCTACCACCTTGTCATT-GTCTTGCACAATTTTTTGT 384251
Query 41090 TTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGT 41149
| |||||| || | || |||||||| || ||| | | || |||||| | || ||
Sbjct 384250 TGCCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATTGGGTGT 384191
Query 41150 CCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTT 41209
|| ||||| || || || ||| |||| || ||||||||||| || |||| || |
Sbjct 384190 ACCATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTACTGATCT 384131
Query 41210 AAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269
||| || || || || ||||| || || |||| |||| | || | |||||| || ||
Sbjct 384130 CCGACCAGGGGATTTCGTCCACACTTTGGGCGATGCACATGTCTATAATAATCATATTGA 384071
Query 41270 GCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACG 41329
| |||| |||||| | || ||| ||||| | | ||||||| |||||||||| ||
Sbjct 384070 AGCATTAAAAGAACAGTTAACGCGAGAACCTCGGGCGTTTCCAAAATTACTTATTAAGCG 384011
Query 41330 CGCTGTTGAAA-ACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATC 41388
| ||| ||| |||||| || || | | || || | || || |||||||
Sbjct 384010 TG-AGTTAAAATGCATTGAAGACTTCACGTTTAAGGACTTCGAACTTATTGACTACAATC 383952
Query 41389 CGTACCCTAAAATCCACATGGACATGTCTGTATGATA 41425
|||| || ||||| ||||| ||| |||| | |||
Sbjct 383951 CGTATCCAAAAATTTCAATGGAAATGGCTGTTTAATA 383915
>seq2718
Length=1670031
Score = 167 bits (184), Expect = 2e-36
Identities = 312/455 (69%), Gaps = 5/455 (1%)
Strand=Plus/Plus
Query 43834 ACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAA 43893
||||||||| || || || || ||||| || || || || || || ||||||||
Sbjct 70873 ACATTTTATTTCCCACGTGTTAGCCTTTTTCGCCGCATCTGATGGTATTGTGAATGAAAA 70932
Query 43894 TTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGT 43952
| | ||| || || ||| || ||||| ||| | |||| ||||| || || ||||| |
Sbjct 70933 TGTAGTTGAACGCTTCTGC-CAGGAAGTCCAAGTGACAGAGGCACGTTGCTTCTATGGAT 70991
Query 43953 TTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACA 44012
|||||||||| || || ||| | ||||| |||||||| || | | || ||||| || |
Sbjct 70992 TTCAAATTGCGATGGAGAATGTGCATTCTGAAATGTATAGCATATTAATTGATACATATA 71051
Query 44013 TCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTA 44072
| || || | | | | | || | || || ||||| ||||| ||| | ||||| | |
Sbjct 71052 TTAAGGACTCGAAACAAAGGAATTGCTTATTCAATGCTATAGAGACAATGCCTGCCGTAA 71111
Query 44073 AACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA---TGATTCTTTTGGAGAAC 44129
| | ||| ||||| ||||| ||| ||||| ||| || | ||||| ||||
Sbjct 71112 AGCGTAAGGCAGATTGGGCGCTTGCTTGGATTTCTTCGAAGTCGGCCAACTTTGGTGAAC 71171
Query 44130 GACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATAT 44189
| | | || ||||| | || ||||| |||||||| || ||||| | || |
Sbjct 71172 GTGTAATTGCATTTGCTGCCGTTGAAGGTATTTTCTTCAGTGGCAGTTTTGCTTCGATCT 71231
Query 44190 TTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTC 44249
| ||| | |||||||| ||||| ||||| || ||||| ||||| ||||| |||| |
Sbjct 71232 TCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTTGACATTTTCCAATGAACTAATTTCAC 71291
Query 44250 GTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
| ||||| || | ||||| || || || || |||
Sbjct 71292 GAGATGAGGGACTTCATTGTGACTTCGCATGTTTG 71326
>seq669
Length=2794457
Score = 113 bits (124), Expect = 4e-20
Identities = 193/279 (69%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598
||| ||| |||||| |||||||| | |||||| | || || ||||| || | | ||
Sbjct 432013 CAACAGTGGTTTGCATATTATAATTTTCGATGAAATAGATGCTATCTGCAAAGCACGTGG 431954
Query 19599 TTCTGG---TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652
|| | || ||| || ||||| || || || ||||||||| | || | ||| |
Sbjct 431953 CTCGGTCGCTGGCAATAGTGGCGTACACGATACAGTGGTCAATCAATTGCTCGCTAAAAT 431894
Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712
|| ||||| | ||| |||| || || || ||||| |||||||| || |||| || |
Sbjct 431893 CGATGGTGTCGAACAATTGAACAACATATTGGTTATCGGCATGACAAACAGACGTGACAT 431834
Query 19713 AATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACC 19772
|| ||| || || | ||||||||||| ||||| | | || || |||| || ||
Sbjct 431833 GATTGACGAAGCTTTGCTGCGACCCGGTCGCTTGGAGGTGCAAATGGAGATTAGTTTGCC 431774
Query 19773 CGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811
| | ||| || |||||| ||||| | || ||||||||
Sbjct 431773 CAACGAAGAGGGTCGTGTGCAAATTCTGAATATACATAC 431735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397439985752530
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |