Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq314 179 3e-40 seq2718 167 2e-36 seq669 113 4e-20 >seq314 Length=932230 Score = 179 bits (198), Expect = 3e-40 Identities = 391/577 (68%), Gaps = 10/577 (2%) Strand=Plus/Minus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 |||||||| ||||||||||| || || |||||||| ||||||| ||| |||||||| || Sbjct 384486 GATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCC 384427 Query 40914 AAATAT-GACACT--ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC 40970 || || || ||| | | || | || | || | || || |||||| | ||| Sbjct 384426 AAGTACAGAAACTGCAAGGACAGT---TACAAAGATGAGGGTATAGATCAACTTCAGCAA 384370 Query 40971 GTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAAC 41030 || || || || || | | |||| || |||||||| ||| ||| || ||||| Sbjct 384369 GTAATTGACACTATCAGAAATAATCCAAATGATCGACGTATTATAATGTCTGCTTGGAAT 384310 Query 41031 CCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGT 41089 || || | | | ||||| | ||||||||||||| || || || |||| || Sbjct 384309 CCTGTCGATATCCCTCAAATGGCGCTACCACCTTGTCATT-GTCTTGCACAATTTTTTGT 384251 Query 41090 TTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGT 41149 | |||||| || | || |||||||| || ||| | | || |||||| | || || Sbjct 384250 TGCCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATTGGGTGT 384191 Query 41150 CCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTT 41209 || ||||| || || || ||| |||| || ||||||||||| || |||| || | Sbjct 384190 ACCATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTACTGATCT 384131 Query 41210 AAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 ||| || || || || ||||| || || |||| |||| | || | |||||| || || Sbjct 384130 CCGACCAGGGGATTTCGTCCACACTTTGGGCGATGCACATGTCTATAATAATCATATTGA 384071 Query 41270 GCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACG 41329 | |||| |||||| | || ||| ||||| | | ||||||| |||||||||| || Sbjct 384070 AGCATTAAAAGAACAGTTAACGCGAGAACCTCGGGCGTTTCCAAAATTACTTATTAAGCG 384011 Query 41330 CGCTGTTGAAA-ACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATC 41388 | ||| ||| |||||| || || | | || || | || || ||||||| Sbjct 384010 TG-AGTTAAAATGCATTGAAGACTTCACGTTTAAGGACTTCGAACTTATTGACTACAATC 383952 Query 41389 CGTACCCTAAAATCCACATGGACATGTCTGTATGATA 41425 |||| || ||||| ||||| ||| |||| | ||| Sbjct 383951 CGTATCCAAAAATTTCAATGGAAATGGCTGTTTAATA 383915 >seq2718 Length=1670031 Score = 167 bits (184), Expect = 2e-36 Identities = 312/455 (69%), Gaps = 5/455 (1%) Strand=Plus/Plus Query 43834 ACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAA 43893 ||||||||| || || || || ||||| || || || || || || |||||||| Sbjct 70873 ACATTTTATTTCCCACGTGTTAGCCTTTTTCGCCGCATCTGATGGTATTGTGAATGAAAA 70932 Query 43894 TTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGT 43952 | | ||| || || ||| || ||||| ||| | |||| ||||| || || ||||| | Sbjct 70933 TGTAGTTGAACGCTTCTGC-CAGGAAGTCCAAGTGACAGAGGCACGTTGCTTCTATGGAT 70991 Query 43953 TTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACA 44012 |||||||||| || || ||| | ||||| |||||||| || | | || ||||| || | Sbjct 70992 TTCAAATTGCGATGGAGAATGTGCATTCTGAAATGTATAGCATATTAATTGATACATATA 71051 Query 44013 TCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTA 44072 | || || | | | | | || | || || ||||| ||||| ||| | ||||| | | Sbjct 71052 TTAAGGACTCGAAACAAAGGAATTGCTTATTCAATGCTATAGAGACAATGCCTGCCGTAA 71111 Query 44073 AACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA---TGATTCTTTTGGAGAAC 44129 | | ||| ||||| ||||| ||| ||||| ||| || | ||||| |||| Sbjct 71112 AGCGTAAGGCAGATTGGGCGCTTGCTTGGATTTCTTCGAAGTCGGCCAACTTTGGTGAAC 71171 Query 44130 GACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATAT 44189 | | | || ||||| | || ||||| |||||||| || ||||| | || | Sbjct 71172 GTGTAATTGCATTTGCTGCCGTTGAAGGTATTTTCTTCAGTGGCAGTTTTGCTTCGATCT 71231 Query 44190 TTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTC 44249 | ||| | |||||||| ||||| ||||| || ||||| ||||| ||||| |||| | Sbjct 71232 TCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTTGACATTTTCCAATGAACTAATTTCAC 71291 Query 44250 GTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | ||||| || | ||||| || || || || ||| Sbjct 71292 GAGATGAGGGACTTCATTGTGACTTCGCATGTTTG 71326 >seq669 Length=2794457 Score = 113 bits (124), Expect = 4e-20 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 ||| ||| |||||| |||||||| | |||||| | || || ||||| || | | || Sbjct 432013 CAACAGTGGTTTGCATATTATAATTTTCGATGAAATAGATGCTATCTGCAAAGCACGTGG 431954 Query 19599 TTCTGG---TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652 || | || ||| || ||||| || || || ||||||||| | || | ||| | Sbjct 431953 CTCGGTCGCTGGCAATAGTGGCGTACACGATACAGTGGTCAATCAATTGCTCGCTAAAAT 431894 Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712 || ||||| | ||| |||| || || || ||||| |||||||| || |||| || | Sbjct 431893 CGATGGTGTCGAACAATTGAACAACATATTGGTTATCGGCATGACAAACAGACGTGACAT 431834 Query 19713 AATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACC 19772 || ||| || || | ||||||||||| ||||| | | || || |||| || || Sbjct 431833 GATTGACGAAGCTTTGCTGCGACCCGGTCGCTTGGAGGTGCAAATGGAGATTAGTTTGCC 431774 Query 19773 CGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | | ||| || |||||| ||||| | || |||||||| Sbjct 431773 CAACGAAGAGGGTCGTGTGCAAATTCTGAATATACATAC 431735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397439985752530