Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3107 324 1e-83 seq603 107 2e-18 seq2605 104 2e-17 seq1558 86.0 5e-12 >seq3107 Length=1323484 Score = 324 bits (358), Expect = 1e-83 Identities = 1031/1579 (65%), Gaps = 45/1579 (3%) Strand=Plus/Plus Query 130403 CTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATG 130462 || || || || || ||||| || ||||| | || || || || ||||||||||||||| Sbjct 934415 CTTTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATG 934474 Query 130463 CCTGTTTTGAGTCCAATTTTGTGTCC--ATAATTGTGGATGCTGCACATTGTTTGGTAAT 130520 || || ||||| || || || | || ||| | | | | | | || | Sbjct 934475 CCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAATGTATA-GAAGTAAGCT-TACCATAGT 934532 Query 130521 TGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTG 130580 |||| | |||||| |||||||| ||| || |||||| || || || || | |||| Sbjct 934533 TGGGCTCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTG 934592 Query 130581 CAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAA 130640 ||||||| | || ||||| ||||||||| | || ||||||||||| | | Sbjct 934593 CAGCCATTTTGATTGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTA 934652 Query 130641 TGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGC 130700 |||| | |||||| |||| ||| | | ||| ||| |||||| | || Sbjct 934653 TGTGCTGTGGTATGGATTCAATATTTTGTATGGAGCCGCGACTGGTTATAATATTATTCT 934712 Query 130701 GCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 |||| | ||| |||| || | || ||||| | ||| |||| ||| | | Sbjct 934713 TCATATCATCATCCCACAAACCCAACTCGGTTAGATCGCGCAACAAGTGATGATTTACAA 934772 Query 130761 TTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGG 130820 |||||| ||||| | || || || | ||||| ||| ||| | |||||||| | Sbjct 934773 CTTGAAATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTGTATGGTTCAAATG 934832 Query 130821 ATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAG 130880 | || |||||||| | ||||||||||| | || || |||||| || | | || || Sbjct 934833 ACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGTAAAG 934892 Query 130881 AATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGG 130940 | || || | ||| || | | ||||| ||||||||| ||||| ||| ||| | Sbjct 934893 AGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAG 934952 Query 130941 TAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGA-- 130998 | ||| | || | |||||| ||| | ||||| || || ||||| |||| || | Sbjct 934953 TTGGTGTT---TTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGG--TGAACC 935007 Query 130999 TTCGAACGATTCGTAGATTCC------TTCGACACGAGCCAGGTCGTTGCTAGCTTCCAA 131052 |||| | | ||| ||| || |||| || | ||| ||||||||||| Sbjct 935008 TTCGTAAGTTTCATAGGGGCCAAGTTTTTCG------GCTAATTCGCAACTAGCTTCCAA 935061 Query 131053 AGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTC 131112 || || || ||||| |||||| ||||| | ||| || || |||| | || || Sbjct 935062 GGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTTCTTCACTTTC 935121 Query 131113 GTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGG 131172 ||| ||| | ||||||||| |||||||| || | |||||||| |||| || | || Sbjct 935122 GTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCCTGTACTCCAATACCGATGGG 935181 Query 131173 TCTATGTTTTAAATTACATTTACGCGAACATTCGGT--GGGATAAAGGTTAATGTCAATT 131230 | |||| | ||||| |||| | | | | |||| ||||||| | |||||||| ||| Sbjct 935182 ACGATGTCTGAAATTCGATTTCCTTG--CCTCCGGTAAGGGATAATGATTAATGTCTATT 935239 Query 131231 ATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAAC 131290 ||||| || ||||| || || ||| ||||| ||| | | || || || Sbjct 935240 ATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTCTTTGAGGCGCTTAAAGTCGTAC 935299 Query 131291 GTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCC 131350 || ||||| | | ||||| ||| | ||||| |||| || || || || Sbjct 935300 GTTT---TTTCGGGTGTGACAAACATATTCAACGCGATTGAAGCCAAGTTGCACACAGCT 935356 Query 131351 GTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTG 131410 || ||| | |||| | |||||||||| || |||||||| | ||| || || Sbjct 935357 ACCTCATCAGGTGCTGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTA 935416 Query 131411 CCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGT 131469 || | ||| |||||||| || || ||| ||| | || || |||| |||||| || || Sbjct 935417 CCAACATTCTGTTGATTACTCTTTCGATT-ACAAGCATCTTTATACAACATGTATGGTGT 935475 Query 131470 GCCCGTTTCGACTTGAGTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGA 131527 ||| || || ||||| | |||||||||| | | ||||| ||| | || || Sbjct 935476 GCCGGTCTCCACTTGCGATTCAATAATGCTAAACCAAAGACTTTGTGCTTTTACT-TTCT 935534 Query 131528 TATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC--AA 131585 |||| | | | || | ||| || || || || |||| || | || || | Sbjct 935535 TATTAGCAC-GTCCTTCCTGTTCATATTTCAGATATAATTTTTCGAACTCTTCACCCCAT 935593 Query 131586 ACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTT 131645 || ||| | | |||||| | | ||||||||||||||||| | | || || Sbjct 935594 ACTTCATGT--AGACCGGGACACTTGTGTGGACACATTAGCGACCAGTCTTCATTGGCTT 935651 Query 131646 CAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTT 131705 | || || |||||||| | ||| || | ||| || || || |||| |||||| || | Sbjct 935652 CTACACGTTTCATAAATAGATCAGGTATCCACAAAGCATAAAACAAATCTCTGGCGCGAT 935711 Query 131706 TCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGG 131765 ||||||| | || | |||| ||||||| ||||| | ||||| || |||||||| | Sbjct 935712 GCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAATTGGAAAATATCAGCATGCCATG 935771 Query 131766 GTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAA 131822 |||||| || | || | ||||||| || |||||| ||||||| |||| || Sbjct 935772 GTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCGCCACCTTGATCCACATAGCGTG 935831 Query 131823 CCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT 131882 | | || ||| | || |||||||| ||| |||||||||| | | ||||| || | | Sbjct 935832 CTACATTATTGAACACTCGCAACATAGGCACCAAACCGTTTGATGTGCCATTTGTACCCG 935891 Query 131883 TAA-TGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTAT 131941 || || || |||| || || | || || ||||| || |||||||| || | || Sbjct 935892 CAATTGCAG-TGCCTTTTGCACGTATGCAATGTACGTTCAGACCAATACCCCCAGCAGAT 935950 Query 131942 TTAGAGATTAGTGCGCATT 131960 || || || | ||| |||| Sbjct 935951 TTGGAAATCAATGCACATT 935969 >seq603 Length=780983 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || || || || ||||| ||| || |||| ||||||| Sbjct 745778 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCC 745719 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||||||||| | || | ||| |||||||| || || | || ||||| || Sbjct 745718 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 745659 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | |||| | ||| || | | |||||| || ||||| || | ||| Sbjct 745658 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 745599 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||| ||||||||||| Sbjct 745598 CCAGTCAAGGTCTTCACGAAGATTTGCAT 745570 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||||||||| | || | |||||||| | || || || || || |||||||||||| Sbjct 747780 GCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGA 747721 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | || | || || || || || ||||| |||| | ||| |||||||| || || Sbjct 747720 CAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGG 747661 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| |||||| || | | || | || |||| || || || Sbjct 747660 AATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGAC 747601 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | || || | |||||| || || || || || |||||||||||| Sbjct 747600 TTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCATA 747552 >seq2605 Length=276952 Score = 104 bits (114), Expect = 2e-17 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 ||| ||||| || ||||| ||||| |||||||| ||||| || |||| ||| | |||| Sbjct 242106 TACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGT-GCGACCATCTT 242048 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | || || ||||| |||| |||||||||||||| || || | || || ||||| Sbjct 242047 CCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTT 241988 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || ||| || | ||| | ||| || | | ||||| || ||||| || | | Sbjct 241987 GAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCT 241928 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTATTAAACCTTAT 27274 | ||||| || ||||| || || |||||||| |||| || ||| | |||||| || Sbjct 241927 TACCCGTAAGGGTTTTTACGAAAATTTGCATTGCTG--AACAATCTTACAAACCTAAT 241872 >seq1558 Length=2163639 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||||||| | || || || ||||| || ||||||||| || | |||| | Sbjct 2034162 CGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCA 2034103 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | || || |||||| | || | |||||||||||| || || | ||||||||| Sbjct 2034102 TCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTA 2034043 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || ||| | |||| | ||||| | | || || |||| || || Sbjct 2034042 TCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATG 2033983 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || | ||||| || || || ||||| Sbjct 2033982 GTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424917278596272