Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 2e-13 seq1113 87.8 2e-12 >seq2 Length=5358759 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || ||||||||||| |||||||| || | |||||||||| || | || || ||| | Sbjct 1535151 CCAACCGCATCAATTTCATCAATAAACAAAATACATGGTGCATGCTTTCGAGCCATTGAA 1535210 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| ||||||| | | ||| ||||||||||||||||||| ||| | | | Sbjct 1535211 AACATATCTCGAACCCGTGACGGACCTACACCAACAAACATCTCCAAAAACTCGGAACCG 1535270 Query 11744 GA-GCACTGGATGAATGGGACATTTGATTCACCCGCG 11779 || |||| || || || ||||||| |||||| ||| Sbjct 1535271 GATACACT-TATAAAAGGAACATTTGCTTCACCAGCG 1535306 >seq1113 Length=4665328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 |||||||||||| ||||| ||||| |||||||||| ||||| | | ||||| || Sbjct 2122999 TCTTTACCACCCTGCAGACGTGTACCGAATTGACCACGAGGCTCCAATAAATTAATATTA 2122940 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCC-GCAAGGGACACTTCACC 181924 ||||| ||| || | | ||||| || || |||||| || |||| |||| ||||| Sbjct 2122939 TTTGATCCTACGTAATTTTGCGCCAAATTGACTATGGTAGCCTGCAA-TGACATCTCACC 2122881 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||| ||||| || ||| | || || || | | | ||| || || || |||| ||| Sbjct 2122880 GTGATGGTAGGCGGACATTTCAGCCACTGAACCAGACAATTGGGCAACTTTCACCTCACG 2122821 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 |||| || | ||| || | | |||| ||||| | || || || | |||||| Sbjct 2122820 TTTGTCATTACGTTTGAAACAGGTAAACATAACTTTGCGTTGGCCCGGTTTAAAACCATC 2122761 Query 182045 CGCCA 182049 | ||| Sbjct 2122760 CACCA 2122756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628006046577600