Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3107 109 6e-19 >seq3107 Length=1323484 Score = 109 bits (120), Expect = 6e-19 Identities = 545/860 (63%), Gaps = 21/860 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||||| ||||| || ||||||||||| ||||| |||||||| ||| | | Sbjct 936180 CCACAGCATATGTTAATGCGTGTTGCCATCGGTATACATGGCGAAGACATAGATGCAGCA 936121 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | || |||||| || | | ||| || || || | || || | ||||| || ||| Sbjct 936120 ATCGAAACATACAACTTGCTTTCCGAACGTTATTTTACGCATGCTTCTCCAACGCTATTC 936061 Query 104342 AATGCTGGTACACCAAGA--CCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||| ||||||| || ||| |||| ||||| || | ||| ||| | Sbjct 936060 GCTGCTGC--CACCAAGCAGCCGCAATTGTCATCATGCTTTCTACTGACCATGGTGGACG 936003 Query 104400 ACTCAATCAACGGTATCT----AT-GGAAC-TCTTACGGAGTGTGCGCAAATCTCAAAGT 104453 | || || | || || | || || || || | ||||| || || || | Sbjct 936002 ATTCCATTGATGGGATTTTCACATCGGCACATC------AATGTGCATTGATTTCCAAAT 935949 Query 104454 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 104513 |||||||||||||| || || | ||| | | || || || ||| || Sbjct 935948 CTGCTGGGGGTATTGGTCTGAACGTACATTGCATACGTGCAAAAGGCACTGCAATTGCGG 935889 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | |||||||| |||| | ||| | | || ||| | || || || || ||| | Sbjct 935888 GTACAAATGGCACATCAAACGGTTTGGTGCCTATGTTGCGAGTGTTCAATAATGTAGCAC 935829 Query 104574 GCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 ||||||| |||||| ||| || || || | | || |||| || || |||| Sbjct 935828 GCTATGTGGATCAAGGTGGCGGTAAACGTCCAGGCGCATTTGCCATCTACCTGGAACCAT 935769 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||| || ||||| | | || | || ||| ||| || | || ||| | Sbjct 935768 GGCATGCTGATATTTTCCAATTTTTGGATTTGAAGAAAAACACTGGGAAAGAAGAGCATC 935709 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | | ||| | || | ||| | ||||| || ||||| || ||||| | || || | Sbjct 935708 GCGCCAGAGATTTGTTTTATGCTTTGTGGATACCTGATCTATTTATGAAACGTGTAGAAG 935649 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 | || | ||||| || | |||||| ||||| || ||||| || | || Sbjct 935648 CCAATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCCCGGTCTACATGAAGTATGGG 935589 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 |||| ||||| ||| | || || || || | ||||| || || | | || | Sbjct 935588 GTGAAGAGTTCGAAAAATTATATCTGAAATATGAACAGGAAGGACGTGCTAATAAGAAAG 935529 Query 104871 TGCCAGCTGCCGATGTGTGGAA-AGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | ||| | | ||| ||| ||| | | || ||| ||||| || |||||| Sbjct 935528 TAAAAGCACAAAGTCTTTGGTTTAGC-ATTATTGAATCGCAAGTGGAGACCGGCACACCA 935470 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 |||||| | || ||||| || ||||| | ||||||||||||| ||||| | ||| || Sbjct 935469 TACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCAACAGAATGTTGGTACAATT 935410 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 ||| || ||| | ||||| ||||| |||||| | ||| |||||| |||||| Sbjct 935409 AAGTGTAGTAATTTATGTACCGAAATTGTGGAATATTCAGCACCTGATGAGGTAGCTGTG 935350 Query 105050 TGTAACCTCGCATCAATCGC 105069 || ||| | || |||||||| Sbjct 935349 TGCAACTTGGCTTCAATCGC 935330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583236696747440