Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1113 82.4 8e-11 >seq1113 Length=4665328 Score = 82.4 bits (90), Expect = 8e-11 Identities = 183/273 (67%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||| ||| || ||||| ||||| ||||||||||| Sbjct 2123026 GTGAAAATATAACGAGCGCTCGCACAATCTTTACCACCCTGCAGACGTGTACCGAATTGA 2122967 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| |||||||| | || | || || | || || | ||||| ||||| ||||| Sbjct 2122966 CCACGAGGCTCCAATAAATTAATATTATTTGATCCTACGTAATTTTGCGCCAAATTGACT 2122907 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || ||| | || | | |||||| || || || || | | || ||||| | || Sbjct 2122906 ATGGTAGCCTGCAATGACATCTCACCGTGATGGTAGGCGGACATTTCAGCCACTGAACCA 2122847 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAG--GTTCTTCTTGAGGCAGGCATAAATCA 117542 | || || || || |||| || |||| | || |||| |||| | | || | Sbjct 2122846 GACAATTGGGCAACTTTCA--CCTCACGTTTGTCATTACGTTTGAAACAGGTAAACATAA 2122789 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575 | ||||| || | || || | ||||||| ||| Sbjct 2122788 CTTTGCGTTGGCCCGGTTTAAAACCATCCACCA 2122756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193386298800