Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2605 168 8e-37
seq603 150 2e-31
seq3107 87.8 2e-12
>seq2605
Length=276952
Score = 168 bits (186), Expect = 8e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || ||||| || ||||| || ||||||||||||||| |
Sbjct 241896 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTC 241955
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| |||| | || | ||||| |||||||| || ||||| |||||||| || || ||
Sbjct 241956 GGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCTGATCA 242015
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||||||||||| || |||||| | || |||| ||| || | || ||||||||
Sbjct 242016 ACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAA 242075
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | || || || || || | ||| |||| | |||||| | |||||
Sbjct 242076 TATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 242123
>seq603
Length=780983
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| | || |||||||| || ||||| |||||||| ||
Sbjct 745569 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 745628
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| |||| |||| | || ||||| ||||| ||||| || ||||| || ||||| ||
Sbjct 745629 CGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCA 745688
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| |||| ||||| ||||| ||||| || || | || || || | || || ||
Sbjct 745689 ACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTACAA 745748
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || |||||| | || | ||||| || |||||
Sbjct 745749 CATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 745796
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || ||||| || || ||||| || || || | || || ||| |
Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | |||||||| || || || || || || ||||| ||||| ||
Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | |||||||| || |||||||| ||||||| ||||| | | ||||| |||
Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||||| || || ||| | || | ||||||||||| ||
Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 747779
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || ||||| || | || || || || || ||| | ||||||||| |
Sbjct 745798 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 745857
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | || ||||||||||| || ||||| ||||| || ||||| ||
Sbjct 745858 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 745917
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | ||||| ||||| || || | ||||||| || || || | |||||||||
Sbjct 745918 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 745977
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||||||||||| ||| |||| | || | || |||||
Sbjct 745978 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGG 746024
>seq3107
Length=1323484
Score = 87.8 bits (96), Expect = 2e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 80037 CGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096
||| |||| ||| ||||||||||||||||| || |||||||||| | | || |||||
Sbjct 934456 CGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAATGTATAGA 934515
Query 80097 ACTGAGCTTCGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155
| | ||||| || ||| |||| | ||| | ||||| | |||||| ||| ||
Sbjct 934516 AGTAAGCTTACCATAGT-TGGGCTCAGCCACGTGTATGTTGAACGACTGACTTTGATCGA 934574
Query 80156 TGAAAGCCCCACGATCTGCCGCCATTT 80182
|||| || || |||||||| |||||||
Sbjct 934575 TGAATGCACCGCGATCTGCAGCCATTT 934601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570286831922720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |