Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 114 8e-21
seq603 111 1e-19
seq2605 93.3 3e-14
>seq1558
Length=2163639
Score = 114 bits (126), Expect = 8e-21
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| ||||||||||| || ||||||||| ||||| || || ||
Sbjct 2034174 CCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 2034115
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | ||| || ||||| || || ||||||||||| || || ||
Sbjct 2034114 AAGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 2034055
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658
| ||||| || ||| ||| ||| | ||| || | || ||||| ||| ||
Sbjct 2034054 ATGCCCTCTTTATCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGAC 2033996
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| | ||| || || ||||| ||||| ||||| || ||||||||||| |||
Sbjct 2033995 CTCTAAGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTTG 2033944
>seq603
Length=780983
Score = 111 bits (122), Expect = 1e-19
Identities = 160/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||| || || |||||| || ||||| ||||| || || || ||
Sbjct 745787 AGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGT 745728
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| ||||||||||||||||| |||||||| ||||| || || || | ||| ||
Sbjct 745727 CCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCT 745668
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| || | |||||| | ||| || || || || |||| ||
Sbjct 745667 TTGTCT-TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGT 745609
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || || || || || ||||| || || ||||| |||
Sbjct 745608 GATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 745566
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | |||||| | |||||||||||| || ||||| || || || || || |
Sbjct 747781 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 747722
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| | || || | || |||||||| || |||||||| || ||||| ||||| || || |
Sbjct 747721 ACAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTG 747662
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | || || || ||| |||| || | ||||| | ||| || ||| | |||
Sbjct 747661 GAATGCCTTCTTTATCTTGGATC-TTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCG 747603
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||||| ||| || ||||| || || | || || || || || |||||
Sbjct 747602 ACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|| ||||| |||||| ||||| ||||| ||||| || || ||||| || | || ||
Sbjct 746006 ACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 745947
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
| ||||| || || || || ||||| ||||| || || || | ||| ||||| ||| ||
Sbjct 745946 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT-TG 745888
Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| ||| | ||| || | ||| || || ||| || |||| || || |||||
Sbjct 745887 AATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTT 745828
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| || ||||||||||||
Sbjct 745827 TCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797
>seq2605
Length=276952
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| ||||||||||| | || ||||| | || ||| || ||||| ||||| || |
Sbjct 242125 CGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAG 242066
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| ||| || | ||||| | ||| || |||||||| |||| ||||||||| || || |
Sbjct 242065 CCAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGG 242006
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656
| | ||| ||||| ||| ||| ||| | ||||| | ||| || || |||
Sbjct 242005 GAATTCCTTCCTTATCT-TGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCA 241947
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || || || ||||| || | ||||| || ||||| |||||
Sbjct 241946 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 241897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314716918954298
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |