Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1558 167 2e-36 seq603 167 2e-36 seq2707 125 6e-24 seq2605 120 3e-22 >seq1558 Length=2163639 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || || ||| | ||||| | || || || || || Sbjct 2033948 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAGCCTTCT 2034007 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||||| ||||| ||||| ||||| || || |||||| Sbjct 2034008 GACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCCCAGATCAA 2034067 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || ||||||||||| || ||| | ||||| |||||| Sbjct 2034068 CAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 2034127 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||||||||| ||||| | || ||||| || Sbjct 2034128 ATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 2034177 >seq603 Length=780983 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || ||||| || || ||||| ||| Sbjct 745570 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATCC 745629 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||||||||||||||| || || || |||||| Sbjct 745630 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCAA 745689 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||| |||||| |||||||| | || | |||||||||||| Sbjct 745690 CAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTACAAC 745749 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||||||||| | ||| | || |||||||| Sbjct 745750 ATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCAT 745799 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||| |||| || || | || ||| | || || || || || Sbjct 745797 CATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTC 745856 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| ||||||||||| || ||||| || || || ||||| Sbjct 745857 CGATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 745916 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||| |||||||| ||||| || | || | ||||| || || Sbjct 745917 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAA 745976 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || ||||||| ||| | || || || ||||| || Sbjct 745977 TATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 746027 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27003 AAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATG 27062 || || || || ||||| | || || | ||||| || || || ||| | ||||||| Sbjct 747340 AAGACCCTCACTGGCAAAACCATCACCTTGGAAGTTGAGCCATCTGACACCATTGAGAAT 747399 Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 |||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| || | Sbjct 747400 GTCAAAGCCAAAATCCAAGATAAGGAAGGAATCCCACCAGATCAACAACGTTTGATTTTT 747459 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 |||||||| |||||||| || | ||| | ||||| ||||||||||| ||||| || Sbjct 747460 GCCGGCAAGCAATTGGAGGATGGACGTACCTTGTCCGACTACAACATTCAGAAGGAATCA 747519 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || || || | || ||||| ||||| || Sbjct 747520 ACCCTCCACTTAGTCCTTCGCTTGCGTGGTGGTAT 747554 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | || || | ||||| || || || Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || ||||| ||||||||||| ||||| |||||| Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||| ||| | || || | || | ||||| ||||| Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || ||||| ||||| | |||||||| | ||| | || || ||| Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGGC 747780 >seq2707 Length=1765650 Score = 125 bits (138), Expect = 6e-24 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 |||||||| || || | |||| | | |||||||||||||| || ||| |||| ||| Sbjct 1303237 TGGAACGCAGCGCAGCTGCAGTTGTTACATGAAGGCAAAATGCATGGTTTTCTGCGTATG 1303296 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 |||||||||||||||||| |||| |||||| | |||||| | || || || ||| Sbjct 1303297 TATTGGGCAAAAAAGATACTGGAGTGGTCTTCTACGCCTGATGCTGCTTTAGAAACAGCA 1303356 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || ||||| |||||| | |||||||||||||| ||| |||| || || || ||| Sbjct 1303357 ATTTTTTTGAATGATAAATACAGTTTAGATGGTTTAGATCCAAACGGATATGTTGGT 1303413 Score = 118 bits (130), Expect = 9e-22 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 135503 CGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGG 135562 || ||||||||||||||||||||| | || | ||||||||| ||||||||| |||||||| Sbjct 1307132 CGTGAAGGCAAAATGCACGGATTTCTTCGTAAGTATTGGGCTAAAAAGATACTGGAATGG 1307191 Query 135563 TCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTA 135622 || || || | |||||||||| || ||||| | ||| || || | || |||||| Sbjct 1307192 TCCAACTCACCAGAAGAGGCGCTAGAAATTGCAATTTATTTAAACGACAAATATAGTTTA 1307251 Query 135623 GATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||||| | ||||| || || || || ||| Sbjct 1307252 GATGGCAGAGATTCCAACGGTTATGTGGGT 1307281 >seq2605 Length=276952 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || ||||| || || |||||||| || || || ||| | || |||||||| || || || Sbjct 241894 GCAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCT 241953 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || || | ||||| || || ||||||||||| || ||||| || || || ||| Sbjct 241954 TCGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCTGAT 242013 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||||||| |||| | ||||| || ||||||||||| || || | | || || Sbjct 242014 CAACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTAT 242073 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||| || ||||| || || ||||| || | ||| | | |||||| Sbjct 242074 AATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGGC 242124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434900426997120