Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq603 104 2e-17 seq1558 98.7 7e-16 >seq603 Length=780983 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || || ||||| ||||| |||||||| |||||| |||| Sbjct 745663 GACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAA 745722 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||||||||||||||| || ||| || | ||||||||| | Sbjct 745723 GACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTT 745782 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 745783 CGTCTACGTGGTGGC 745797 >seq1558 Length=2163639 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843 || |||||||| ||||| || ||||| | ||||| || ||||| | || ||||| Sbjct 2033942 AGCAAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAG 2034001 Query 27844 AGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | ||| || | ||| |||||| ||||| || ||||| || | || Sbjct 2034002 CCTTCTGACACCATCGAAAAT--GTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCC 2034059 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || || || || || || || |||||||| |||||||| || | |||| |||||||| Sbjct 2034060 CAGATCAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTCCG 2034119 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||||||||| ||| || | ||||||||| ||||| | ||||| || Sbjct 2034120 ACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGG 2034174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355848061636662