Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq603 167 2e-36 seq2605 152 3e-32 seq1558 118 7e-22 >seq603 Length=780983 Score = 167 bits (184), Expect = 2e-36 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||| | || || || || |||||||| || ||||| | Sbjct 745567 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 745626 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| |||||| | ||||| | || | || ||||||||||| | || ||||| Sbjct 745627 TCCGATACTATTGAAAATGTTAAAGCTAAGA-TTCAAGACAAAGAAGGAATCCCCCCAGA 745685 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| |||||||| |||||||| |||||||||||||||| ||||||| | |||||| Sbjct 745686 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTA 745745 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || ||||| ||| | ||||| ||| Sbjct 745746 CAACATCCAGAAGGAGTCTACACTTCATTTGGTT 745779 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | ||||||||||| |||||| | || ||||| | | Sbjct 745798 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 745857 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | |||||| || || ||||| | || |||||||| Sbjct 745858 GATACCATTGAGAATGTCAAAGC-TAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 745916 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || |||||||| |||| || | |||||| | ||| || || Sbjct 745917 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAA 745976 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| ||||||||||| || | || || || || Sbjct 745977 TATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGG 746024 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || ||||| ||||| | ||||| || || | Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | || | | || |||||||| | || |||||||| Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGA-TCCAAGATAAAGAAGGCATTCCACCAGATCA 747671 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||||||||| ||||| || || | ||| ||||| ||| ||||| Sbjct 747672 ACAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAA 747731 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || ||| | ||||| || || | | || ||||| Sbjct 747732 TATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 747779 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23626 AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AAT 23684 || |||||||| || ||||| ||||| | |||||||| | | ||||| |||| ||| Sbjct 747340 AAGACCCTCACTGGCAAAACCATCACCTTGGAAGTTGAGCCATCTGACACCATTGAGAAT 747399 Query 23685 ATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATT 23744 | ||| | |||| | || || ||||| | || ||||||||||| ||||| || || Sbjct 747400 GTCAAAGCCAAAA-TCCAAGATAAGGAAGGAATCCCACCAGATCAACAACGTTTGATTTT 747458 Query 23745 TGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTC 23804 ||||||||| ||| |||| || | ||| || || ||| |||||||| || || || || Sbjct 747459 TGCCGGCAAGCAATTGGAGGATGGACGTACCTTGTCCGACTACAACATTCAGAAGGAATC 747518 Query 23805 CACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || | || ||||| | | ||||| || || Sbjct 747519 AACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 747551 >seq2605 Length=276952 Score = 152 bits (168), Expect = 3e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||| ||||| || || |||||||| || ||||| | | Sbjct 241896 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTC 241955 Query 23670 GGACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| ||| ||||| || |||| | |||| || || || ||||| | || || |||| Sbjct 241956 GGATACTATTGAACATGTTAAGGCCAAAA-TTCAAGATAAGGAAGGAATTCCCCCTGATC 242014 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| |||| |||||||| || ||| ||||||| | ||||| || | || || | Sbjct 242015 AACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATA 242074 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || |||||||| ||||| |||||||| Sbjct 242075 ATATTCAGAAAGAGTCTACATTGCATTTAGT 242105 >seq1558 Length=2163639 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||| | || || || || || || | || || || | Sbjct 2033945 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAGCCT 2034004 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | ||| ||||| || ||||| || | || |||||| Sbjct 2034005 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCCCAGAT 2034064 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||||| || || ||||| || ||| ||||||| | ||||| || ||| ||| Sbjct 2034065 CAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTAC 2034124 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||| ||||| || | ||||| ||| Sbjct 2034125 AACATCCAAAAGGAGTCAACCCTCCATTTGGTT 2034157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337995980959448