Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq3306 140 8e-28
seq2823 138 3e-27
seq550 138 3e-27
seq1558 134 3e-26
seq307 131 4e-25
seq603 129 1e-24
seq3156 127 5e-24
seq552 89.7 1e-12
>seq3306
Length=15977
Score = 140 bits (154), Expect = 8e-28
Identities = 134/172 (78%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| |||| || || || | || || ||||| || || || ||||||||| | |||||
Sbjct 1706 CCAAATTTATAATGTAATCGTAACAGCCCATGCTTTCGTAATAATTTTCTTTATAGTTAT 1765
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
|| |||| || ||||| |||||||||||| ||||||| ||||| | ||||| || ||
Sbjct 1766 ACCTATTATAATTGGCGGGTTCGGAAATTGACTCGTTCCCTTAATACTAGGTGCACCAGA 1825
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
||| || || ||| | | ||||||||||| ||||| |||||||| ||||||
Sbjct 1826 TATAGCATTCCCACGAATAAACAATATAAGATTTTGGTTACTACCTCCTTCC 1877
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || || ||||| ||||| ||||| ||||| |||||||||||||| ||||| || |
Sbjct 2279 TTCTGGGTGTCCAAAGAATCAAAATAAGTGTTGGTAAAGGATAGGATCTCCTCCTCCAGC 2220
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|| ||||| || |||||| ||||||| ||| |||||
Sbjct 2219 GGGGTCAAAGAATGAAGTATTTAAATTTCGATCTGTTAA 2181
>seq2823
Length=139783
Score = 138 bits (152), Expect = 3e-27
Identities = 137/176 (78%), Gaps = 1/176 (1%)
Strand=Plus/Minus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| ||||||| || || | || || ||||| || || || ||||||||| | |||||
Sbjct 76013 CAAATTTACAATGTAATCGTAACAGCCCATGCTTTCGTAATAATTTTCTTTATAGTTATA 75954
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| | || || |||||||||||| | ||||||||||| | ||||| || |||
Sbjct 75953 CCCATTATAACTGGAGGATTCGGAAATTGACTTGTTCCTTTAATACTGGGTGCACCAGAT 75894
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTT-CCTTAT 7726
||||| ||||| | | ||||||||||| |||||||||||||| ||| ||||||
Sbjct 75893 ATGGCATTTCCGCGAATAAACAATATAAGATTTTGATTACTACCTTCTTCCCTTAT 75838
>seq550
Length=28804
Score = 138 bits (152), Expect = 3e-27
Identities = 133/171 (78%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| | || ||||| ||| | || || ||||||||||| || ||||||||| | |||||
Sbjct 23482 CAAATCTATAACGTAATTGTAACAGCTCATGCCTTTGTAATAATTTTCTTTATAGTTATA 23541
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| | || || || ||||||||||||||| | ||||||||||| | ||||| |||||
Sbjct 23542 CCTATCATAATTGGAGGTTTCGGAAATTGACTTGTTCCTTTAATATTAGGTGCACCTGAA 23601
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
|| || || ||| | | || ||||||| ||||||||| |||| ||||||
Sbjct 23602 ATTGCATTCCCACGAATAAATAATATAAAATTTTGATTATTACCCCCTTCC 23652
>seq1558
Length=2163639
Score = 134 bits (148), Expect = 3e-26
Identities = 167/226 (74%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||| || | ||||| || || || ||||||| ||||| |||| ||| ||
Sbjct 2034169 ACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 2034110
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | ||||| || |||||||| | || ||||| || || || || ||
Sbjct 2034109 GCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCC 2034050
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
|| || |||||||| ||| |||| ||| |||||||||||| || | || || ||||
Sbjct 2034049 CTCTTTATCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTA 2033991
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
| || || ||||| || || || ||||| | ||| | ||||||||
Sbjct 2033990 AGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945
>seq307
Length=42124
Score = 131 bits (144), Expect = 4e-25
Identities = 132/172 (77%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| |||| || || || | || || ||||| || || || ||||||||| | |||||
Sbjct 23144 CCAAATTTATAATGTAATCGTAACAGCCCATGCTTTCGTAATAATTTTCTTTATAGTTAT 23085
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
|| |||| || || || |||||||||||| | ||||||||||| | ||||| || |
Sbjct 23084 ACCCATTATAATCGGAGGATTCGGAAATTGACTTGTTCCTTTAATACTAGGTGCACCAAA 23025
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
||| || || ||| | | || |||||||| |||||||||||||| ||||||
Sbjct 23024 TATAGCATTCCCACGAATAAATAATATAAGATTTTGATTACTACCTCCTTCC 22973
>seq603
Length=780983
Score = 129 bits (142), Expect = 1e-24
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || || | ||||| || ||||| || || | |||||| |||| ||||||
Sbjct 747773 CGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTA 747714
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || || ||||| || || || || | |||||||| || || ||||| |||
Sbjct 747713 CGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCT 747654
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| || ||||||||||| ||| ||| || ||||| ||||||| || || || ||
Sbjct 747653 TCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAG 747594
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || ||||| || | || || | ||| | ||||||
Sbjct 747593 GTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553
Score = 118 bits (130), Expect = 3e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| ||||||||||| || || | ||| || |||| || || | ||||| || | |||
Sbjct 746000 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 745941
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| |||||||| || | |||||||| || || || || |||||||| ||||| || |||
Sbjct 745940 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAAT-TTT 745882
Query 225631 TGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|||| ||| || ||||| || || | || || || || ||||| || || |||||
Sbjct 745881 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 745822
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
||||||||| | ||| | |||||
Sbjct 745821 CAAAGTTTTGACGAAAATCTGCAT 745798
>seq3156
Length=82084
Score = 127 bits (140), Expect = 5e-24
Identities = 127/165 (77%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| |||| || || || | || || ||||| || || || ||||||||| | |||||
Sbjct 22382 CCAAATTTATAATGTAATCGTAACAGCTCATGCTTTCGTAATAATTTTCTTTATAGTTAT 22441
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
|| |||| || || || ||||| |||||| | ||||||||||| | ||||| || ||
Sbjct 22442 ACCCATTATAATCGGTGGATTCGGGAATTGACTTGTTCCTTTAATACTAGGTGCACCAGA 22501
Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715
|| ||| || ||| | | ||||||||||| ||||||||||||||
Sbjct 22502 TAAGGCATTCCCACGAATAAACAATATAAGATTTTGATTACTACC 22546
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || || ||||| ||||| ||||| ||||| |||||||||||||| ||||| || |
Sbjct 22955 TTCTGGGTGTCCAAAGAATCAAAATAAGTGTTGGTAAAGGATAGGATCTCCTCCTCCAGC 22896
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|| ||||| || |||||| ||||||| ||| |||||
Sbjct 22895 GGGGTCAAAGAATGAAGTATTTAAATTTCGATCTGTTAA 22857
>seq552
Length=22810
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || || ||||| ||||||||||| || |||||||| ||| |||| ||||| || |
Sbjct 11916 TTCTGGGTGCCCAAAGAATCAGAATAAGTGCTGATAAAGAATAAGATCCCCTCCTCCGGC 11857
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
|| ||||||||| |||||| ||||||| || |||||
Sbjct 11856 AGGGTCAAAAAAGGAAGTATTTAAATTTCGGTCTGTTAA 11818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192480686614364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |