Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3306 140 8e-28 seq2823 138 3e-27 seq550 138 3e-27 seq1558 134 3e-26 seq307 131 4e-25 seq603 129 1e-24 seq3156 127 5e-24 seq552 89.7 1e-12 >seq3306 Length=15977 Score = 140 bits (154), Expect = 8e-28 Identities = 134/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || || | || || ||||| || || || ||||||||| | ||||| Sbjct 1706 CCAAATTTATAATGTAATCGTAACAGCCCATGCTTTCGTAATAATTTTCTTTATAGTTAT 1765 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || ||||| |||||||||||| ||||||| ||||| | ||||| || || Sbjct 1766 ACCTATTATAATTGGCGGGTTCGGAAATTGACTCGTTCCCTTAATACTAGGTGCACCAGA 1825 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 ||| || || ||| | | ||||||||||| ||||| |||||||| |||||| Sbjct 1826 TATAGCATTCCCACGAATAAACAATATAAGATTTTGGTTACTACCTCCTTCC 1877 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||| ||||| ||||| ||||| |||||||||||||| ||||| || | Sbjct 2279 TTCTGGGTGTCCAAAGAATCAAAATAAGTGTTGGTAAAGGATAGGATCTCCTCCTCCAGC 2220 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || ||||| || |||||| ||||||| ||| ||||| Sbjct 2219 GGGGTCAAAGAATGAAGTATTTAAATTTCGATCTGTTAA 2181 >seq2823 Length=139783 Score = 138 bits (152), Expect = 3e-27 Identities = 137/176 (78%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| ||||||| || || | || || ||||| || || || ||||||||| | ||||| Sbjct 76013 CAAATTTACAATGTAATCGTAACAGCCCATGCTTTCGTAATAATTTTCTTTATAGTTATA 75954 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| | || || |||||||||||| | ||||||||||| | ||||| || ||| Sbjct 75953 CCCATTATAACTGGAGGATTCGGAAATTGACTTGTTCCTTTAATACTGGGTGCACCAGAT 75894 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTT-CCTTAT 7726 ||||| ||||| | | ||||||||||| |||||||||||||| ||| |||||| Sbjct 75893 ATGGCATTTCCGCGAATAAACAATATAAGATTTTGATTACTACCTTCTTCCCTTAT 75838 >seq550 Length=28804 Score = 138 bits (152), Expect = 3e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || ||||| ||| | || || ||||||||||| || ||||||||| | ||||| Sbjct 23482 CAAATCTATAACGTAATTGTAACAGCTCATGCCTTTGTAATAATTTTCTTTATAGTTATA 23541 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | || || || ||||||||||||||| | ||||||||||| | ||||| ||||| Sbjct 23542 CCTATCATAATTGGAGGTTTCGGAAATTGACTTGTTCCTTTAATATTAGGTGCACCTGAA 23601 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 || || || ||| | | || ||||||| ||||||||| |||| |||||| Sbjct 23602 ATTGCATTCCCACGAATAAATAATATAAAATTTTGATTATTACCCCCTTCC 23652 >seq1558 Length=2163639 Score = 134 bits (148), Expect = 3e-26 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||||| || || || ||||||| ||||| |||| ||| || Sbjct 2034169 ACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 2034110 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || |||||||| | || ||||| || || || || || Sbjct 2034109 GCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCC 2034050 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || || |||||||| ||| |||| ||| |||||||||||| || | || || |||| Sbjct 2034049 CTCTTTATCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTA 2033991 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | || || ||||| || || || ||||| | ||| | |||||||| Sbjct 2033990 AGGTAATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945 >seq307 Length=42124 Score = 131 bits (144), Expect = 4e-25 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || || | || || ||||| || || || ||||||||| | ||||| Sbjct 23144 CCAAATTTATAATGTAATCGTAACAGCCCATGCTTTCGTAATAATTTTCTTTATAGTTAT 23085 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || |||||||||||| | ||||||||||| | ||||| || | Sbjct 23084 ACCCATTATAATCGGAGGATTCGGAAATTGACTTGTTCCTTTAATACTAGGTGCACCAAA 23025 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 ||| || || ||| | | || |||||||| |||||||||||||| |||||| Sbjct 23024 TATAGCATTCCCACGAATAAATAATATAAGATTTTGATTACTACCTCCTTCC 22973 >seq603 Length=780983 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||||| || ||||| || || | |||||| |||| |||||| Sbjct 747773 CGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTA 747714 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || ||||| || || || || | |||||||| || || ||||| ||| Sbjct 747713 CGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCT 747654 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||||||||| ||| ||| || ||||| ||||||| || || || || Sbjct 747653 TCTTTATCTTGGATCTTAGCCTTAACATTCTCAATGGTATCTGAGGGCTCGACTTCCAAG 747594 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || | || || | ||| | |||||| Sbjct 747593 GTGATGGTTTTGCCAGTGAGGGTCTTAACGAAGATTTGCAT 747553 Score = 118 bits (130), Expect = 3e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||| || || | ||| || |||| || || | ||||| || | ||| Sbjct 746000 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 745941 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | |||||||| || || || || |||||||| ||||| || ||| Sbjct 745940 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAAT-TTT 745882 Query 225631 TGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| ||| || ||||| || || | || || || || ||||| || || ||||| Sbjct 745881 AGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 745822 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||||||||| | ||| | ||||| Sbjct 745821 CAAAGTTTTGACGAAAATCTGCAT 745798 >seq3156 Length=82084 Score = 127 bits (140), Expect = 5e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || || || | || || ||||| || || || ||||||||| | ||||| Sbjct 22382 CCAAATTTATAATGTAATCGTAACAGCTCATGCTTTCGTAATAATTTTCTTTATAGTTAT 22441 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || ||||| |||||| | ||||||||||| | ||||| || || Sbjct 22442 ACCCATTATAATCGGTGGATTCGGGAATTGACTTGTTCCTTTAATACTAGGTGCACCAGA 22501 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 || ||| || ||| | | ||||||||||| |||||||||||||| Sbjct 22502 TAAGGCATTCCCACGAATAAACAATATAAGATTTTGATTACTACC 22546 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||| ||||| ||||| ||||| |||||||||||||| ||||| || | Sbjct 22955 TTCTGGGTGTCCAAAGAATCAAAATAAGTGTTGGTAAAGGATAGGATCTCCTCCTCCAGC 22896 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || ||||| || |||||| ||||||| ||| ||||| Sbjct 22895 GGGGTCAAAGAATGAAGTATTTAAATTTCGATCTGTTAA 22857 >seq552 Length=22810 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||| ||||||||||| || |||||||| ||| |||| ||||| || | Sbjct 11916 TTCTGGGTGCCCAAAGAATCAGAATAAGTGCTGATAAAGAATAAGATCCCCTCCTCCGGC 11857 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || ||||||||| |||||| ||||||| || ||||| Sbjct 11856 AGGGTCAAAAAAGGAAGTATTTAAATTTCGGTCTGTTAA 11818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192480686614364