Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3107 607 1e-168 seq2718 251 1e-61 >seq3107 Length=1323484 Score = 607 bits (672), Expect = 1e-168 Identities = 1269/1879 (68%), Gaps = 24/1879 (1%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||||| ||||| || || | | | || ||||| ||||| | ||| ||||| || Sbjct 934418 TTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCC 934477 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 || || ||||| |||| ||| ||||||| || || || || ||| | || Sbjct 934478 GTCTTGAGACCTGCCTTCCAGCCGAAGAAATGTATAGAAGTAAGCTTACCATAGTTGGGC 934537 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || || | || || || | ||||||||||||||||||||| || || | ||| || ||| Sbjct 934538 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAATGCACCGCGATCTGCAGCC 934597 Query 76953 ATTTTTATAATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 77010 ||||| || || | |||| | | ||| ||||||| ||||||| | | | || | Sbjct 934598 ATTTTGAT--TGATGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGT 934655 Query 77011 CATCTGG-AAGGTTT--GTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067 | ||| | || || ||||||| ||||| || | | | |||||| ||||||| | Sbjct 934656 GCTGTGGTATGGATTCAATATTTTGTATGGAGCCGCGACTGGTTATAATATTATTCTTCA 934715 Query 77068 TATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127 ||||||||| |||||| | ||| |||| | | | | | ||| |||| || | || Sbjct 934716 TATCATCATCCCACAAACCCAACTCGGTTAGATCGCGCAACAAGTGATGATTTACAACTT 934775 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 ||||||| || || | || | ||| || |||||||| || |||||||| | || | Sbjct 934776 GAAATTCACCTGAAAGCACACGACGTGTATAAATATTGGAAGTGTATGGTTCAAATGACT 934835 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247 ||||||| |||| |||||| || || |||||||||||||| || || | || |||| | Sbjct 934836 CATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGTAAAGAGT 934895 Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307 | | || ||||||| | ||||| || || | | |||||| ||||||||| | | Sbjct 934896 TGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTTG 934955 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367 || |||||| | || || |||||||| || |||||| | ||| || | || | Sbjct 934956 GTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTTCGTAAG 935015 Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAA 77427 ||||||| || || | |||| |||| ||| ||||| |||||||| || || || |||| Sbjct 935016 TTTCATAGGGGCCAAGTTTTTCGGCTAATTCGCAACTAGCTTCCAAGGCGCCATAGTAAA 935075 Query 77428 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTA 77487 |||||||||| || | || ||| | | | |||||| ||| || | |||||| | | Sbjct 935076 TTGTTTCGAATATTTGCTGATTCAAAAGTAATGCTTCTTCACTTTCGTATGGATAACGCA 935135 Query 77488 AAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 77547 | ||| || || || || || ||||| ||||||||||| || || | |||||| || Sbjct 935136 TTAAAATTAAAGCGTCAGCAAAACCCTGTACTCCAATACCGATGGGACGATGTCTGAAAT 935195 Query 77548 TGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTC 77607 | || | | || || || | ||||||| |||||||||||| |||||||| | ||| | Sbjct 935196 TCGATTTCCTTGCCTCCGGTAAGGGATAATGATTAATGTCTATTATTTTATTCAAATTAC 935255 Query 77608 TAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA---TCTTCCATCTATAA 77664 ||| ||| || || || || ||| || | | || | | | | Sbjct 935256 GTGTAACGGTTTTGGTGACCTCTTTGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGA 935315 Query 77665 CAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCAT 77724 ||||||| ||||| || || || || | || || || |||||||||| || | || Sbjct 935316 CAAACATATTCAACGCGATTGAAGCCAAGTTGCACACAGCTACCTCATCAGGTGCTGAAT 935375 Query 77725 ATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGC 77784 ||| | || |||||||||| ||||||||| || || || || | ||| ||||| || | Sbjct 935376 ATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTACCAACATTCTGTTGATTAC 935435 Query 77785 TCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATT 77844 ||||| ||| || | || ||||| | || | || || ||||| || | || |||| Sbjct 935436 TCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATT 935495 Query 77845 CGATAATAGATTTCCAGACGACTCT-AGCTTTTA---TCATAGATTTGTATCGCCTCTCT 77900 | ||||| | | | | |||| | ||||||| || | ||| | | || | || Sbjct 935496 CAATAAT-GCTAAACCAAAGACTTTGTGCTTTTACTTTCTT--ATTAGCA-CGTCCTTCC 935551 Query 77901 CTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGG 77960 |||||||| ||||| ||| || || || ||||| || |||| | || || Sbjct 935552 TGTTCATATTTCAGATATAATTTTTCGAACTCTTCACCCCATACTTCATGTAGACCGGGA 935611 Query 77961 CATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGA 78020 || | | ||| ||||| | |||||||| ||| | | || ||||||||||| ||| Sbjct 935612 CACTTGTGTGGACACATTAGCGACCAGTCTTCATTGGCTTCTACACGTTTCATAAATAGA 935671 Query 78021 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTC 78080 ||||||||||| | |||| ||| | ||||| || | ||| ||||| || || || || Sbjct 935672 TCAGGTATCCACAAAGCATAAAACAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTT 935731 Query 78081 TTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATA 78140 || || | ||| | ||| | | |||||||| |||||||||||| || || || || | Sbjct 935732 TTCTTCAAATCCAAAAATTGGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAAT 935791 Query 78141 ACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTC 78200 | || || |||||| || || ||||| | ||| | || ||||| | |||| | Sbjct 935792 GCGCCTGGACGTTTACCGCCACCTTGATCCACATAGCGTGCTACATTATTGAACACTCGC 935851 Query 78201 AACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCG 78260 ||||| || | | |||||| ||||| |||||||| || | ||| | | || |||| Sbjct 935852 AACATAGGCACCAAACCGTTTGATGTGCCATTTGTACCCGCAATTGCAGTGCCTTTTGCA 935911 Query 78261 CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCA---A 78317 || || | | | | || || || || || || || || | || || | Sbjct 935912 CGTATGCAATGTACGTTCAGACCAATACCCCCAGCAGATTTGGAAATCAATGCACATTGA 935971 Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377 || | |||| | | || || || || || |||| |||| | || ||||| || Sbjct 935972 TGTGCCGATGT---GAAAATCCCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCAT 936028 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 |||| ||| | || || | ||| |||| || ||||| ||||||||||| Sbjct 936029 GATGACAATTGCGGCTGCTTGGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCGTAAAA 936088 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||| ||||| | ||||||||||| || |||| |||||||| ||| || Sbjct 936089 TAACGTTCGGAAAGCAAGTTGTATGTTTCGATTGCTGCATCTATGTCTTCGCCATGTATA 936148 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 || | || |||||||| ||||||||||| |||| ||||| | || ||||| ||| Sbjct 936149 CCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTTAATTTT 936208 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 | ||| || || ||| | |||||||||||||||||| || || ||| || | || Sbjct 936209 AGCAAATAGGAACGTTCAAGAGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGTCA 936268 Query 78618 TAAATAATAACAGAATTTA 78636 |||||||| |||| |||| Sbjct 936269 TAAATAATGGCAGAGTTTA 936287 >seq2718 Length=1670031 Score = 251 bits (278), Expect = 1e-61 Identities = 479/702 (68%), Gaps = 9/702 (1%) Strand=Plus/Minus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| || || ||||| ||||| ||| | || |||||||| || || || || || Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--CGAT 48092 || | ||| || || | || || || || || | ||||| || ||||| | | Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 48093 GTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCA 48152 ||| | | | ||||||| | | ||||||| ||||| |||||||| || ||| Sbjct 71368 AATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCA 71311 Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212 |||||||| || ||||||| ||||| ||| || |||||||| | || ||||||| Sbjct 71310 CAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAA 71251 Query 48213 CCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACG 48272 |||||||| || ||||| || || | || ||| ||| ||||| || ||||| ||| Sbjct 71250 CCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACG 71191 Query 48273 GCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCCACCGTTG 48328 || |||||||| | | | || || | |||| |||| | ||||| | Sbjct 71190 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAAGAA-ATCCAAGCAAG 71132 Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388 |||||||| ||||| |||||| ||||||||| ||||||||||| || | | || Sbjct 71131 CGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGCAATT 71072 Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 ||| || || |||| || ||||| ||||| | ||||||||||| || || | Sbjct 71071 CCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCAC 71012 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 ||| || || || || |||||||| || || || | || ||||| | || || ||| Sbjct 71011 ATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTG 70952 Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 || || |||||| | | ||| ||||| || || |||||| || || ||||| ||||| Sbjct 70951 GCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTAA 70892 Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628 || || |||||||| | ||| || ||| || ||| |||| |||||||| Sbjct 70891 CACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATATCTTT 70832 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || | ||||||||| || ||||||| || ||||| ||||| Sbjct 70831 AGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGC 70790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694640092811840