Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq603 113 1e-19
seq1558 107 4e-18
seq2605 89.7 1e-12
>seq603
Length=780983
Score = 113 bits (124), Expect = 1e-19
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | |||||| |||||||| || |||||||||||||||| | ||| | || |||
Sbjct 745781 AGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCT 745722
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| ||||| ||||| | | || || || | | ||||||||| || |||
Sbjct 745721 TCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCT 745662
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || ||| ||| | || | | || || || || || ||||| || ||
Sbjct 745661 TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTC 745602
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || | ||||||||||||| ||||||||
Sbjct 745601 TTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567
Score = 95.1 bits (104), Expect = 3e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| || || || || || || || |||| | || | |||||
Sbjct 746009 AGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCC 745950
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | ||| || ||||| || | | || || || | | |||||||||||| |||
Sbjct 745949 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 745890
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|||||||| ||||||| |||| | | | || ||| ||| || || | ||| || |||
Sbjct 745889 TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 745830
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| | ||| || ||||| | ||||||
Sbjct 745829 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798
Score = 89.7 bits (98), Expect = 1e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | || || || || || || || |||||||| |||| || || | |||||
Sbjct 747536 AGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATCC 747477
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || ||||| || || | | || || || | | |||||||||||| |||
Sbjct 747476 TCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCT 747417
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| ||||| ||||||| |||| | | |||| || ||| ||||| | || || |||
Sbjct 747416 TGGATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTT 747357
Query 152073 TTGCCCGTGAGAGTCTT 152089
||||| ||||| |||||
Sbjct 747356 TTGCCAGTGAGGGTCTT 747340
>seq1558
Length=2163639
Score = 107 bits (118), Expect = 4e-18
Identities = 155/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| || || ||||| |||||||||||||| |||| || || | ||||||
Sbjct 2034159 AGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 2034100
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| | ||||| ||||||||||| | | ||| || || | | ||| || || || |
Sbjct 2034099 TCCAATTGCTTT--CCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTAT 2034042
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
|||| ||||| ||||||| | || | | |||| ||| ||| || || | ||||| |
Sbjct 2034041 CTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGG 2033982
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
| || || || | || || ||||| | |||||||||
Sbjct 2033981 TCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945
>seq2605
Length=276952
Score = 89.7 bits (98), Expect = 1e-12
Identities = 141/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965
||||||||||| || || || || || || || || | |||||||| | ||||| |
Sbjct 242093 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTT--C 242036
Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025
|||| || || || | ||| || || | | ||||||||||| ||||||||||| |
Sbjct 242035 CGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGAATTTTGGCCT 241976
Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085
| ||| || | | || ||| ||| || |||||||| || || || ||||| || |
Sbjct 241975 TAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGG 241916
Query 152086 TCTTCACGAAGACCTGCATT 152105
| || ||||| | ||||||
Sbjct 241915 TTTTTACGAAAATTTGCATT 241896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153771926314326
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |