Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq603 113 1e-19 seq1558 107 4e-18 seq2605 89.7 1e-12 >seq603 Length=780983 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| |||||||| || |||||||||||||||| | ||| | || ||| Sbjct 745781 AGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCT 745722 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| | | || || || | | ||||||||| || ||| Sbjct 745721 TCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCT 745662 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || ||| ||| | || | | || || || || || ||||| || || Sbjct 745661 TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTC 745602 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | ||||||||||||| |||||||| Sbjct 745601 TTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 745567 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| || || || || || || || |||| | || | ||||| Sbjct 746009 AGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCC 745950 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || ||||| || | | || || || | | |||||||||||| ||| Sbjct 745949 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 745890 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||||| |||| | | | || ||| ||| || || | ||| || ||| Sbjct 745889 TGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 745830 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||| || ||||| | |||||| Sbjct 745829 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 745798 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || || || || || |||||||| |||| || || | ||||| Sbjct 747536 AGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGGACAAGGTACGTCCATCC 747477 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||| || || | | || || || | | |||||||||||| ||| Sbjct 747476 TCCAATTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCT 747417 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||||||| |||| | | |||| || ||| ||||| | || || ||| Sbjct 747416 TGGATTTTGGCTTTGACATTCTCAATGGTGTCAGATGGCTCAACTTCCAAGGTGATGGTT 747357 Query 152073 TTGCCCGTGAGAGTCTT 152089 ||||| ||||| ||||| Sbjct 747356 TTGCCAGTGAGGGTCTT 747340 >seq1558 Length=2163639 Score = 107 bits (118), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || ||||| |||||||||||||| |||| || || | |||||| Sbjct 2034159 AGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 2034100 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||||||||| | | ||| || || | | ||| || || || | Sbjct 2034099 TCCAATTGCTTT--CCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTAT 2034042 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| ||||| ||||||| | || | | |||| ||| ||| || || | ||||| | Sbjct 2034041 CTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGG 2033982 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || | || || ||||| | ||||||||| Sbjct 2033981 TCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 2033945 >seq2605 Length=276952 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 ||||||||||| || || || || || || || || | |||||||| | ||||| | Sbjct 242093 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTT--C 242036 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 |||| || || || | ||| || || | | ||||||||||| ||||||||||| | Sbjct 242035 CGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGAATTTTGGCCT 241976 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 | ||| || | | || ||| ||| || |||||||| || || || ||||| || | Sbjct 241975 TAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGG 241916 Query 152086 TCTTCACGAAGACCTGCATT 152105 | || ||||| | |||||| Sbjct 241915 TTTTTACGAAAATTTGCATT 241896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153771926314326