Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq603 145 2e-29 seq1558 122 2e-22 seq2605 96.9 8e-15 >seq603 Length=780983 Score = 145 bits (160), Expect = 2e-29 Identities = 162/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| |||||||| || | || || || || ||||| || ||||| ||| Sbjct 745567 AAAATGC---AAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAA 745623 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| |||||||| ||||||||||||||||| || Sbjct 745624 CCATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCA 745683 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | ||||| ||||| ||||| || ||||| ||| | ||||| ||||| Sbjct 745684 GATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGAT 745743 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||| |||| || || || ||||| ||| | ||| Sbjct 745744 TACAACATCCAGAAGGAGTCTACACTTCATTTGGTT 745779 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || |||||||| ||||| | ||||| || || || Sbjct 745801 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 745860 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| || ||||| || || ||||||||||| || || || ||| Sbjct 745861 ACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAA 745920 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||| | || |||||| | || || |||| ||||| | Sbjct 745921 CGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAATATT 745980 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || ||| | ||| Sbjct 745981 CAGAAGGAATCCACTCTACATTTAGTT 746007 Score = 104 bits (114), Expect = 6e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 || || ||||| || ||||| |||||| | || || || || |||||||| ||||| Sbjct 747340 AAGACCCTCACTGGCAAAACCATCACCTTGGAAGTTGAGCCATCTGACACCATTGAGAAT 747399 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 |||||| || || || || || ||||||||||| || || || ||||| | || || Sbjct 747400 GTCAAAGCCAAAATCCAAGATAAGGAAGGAATCCCACCAGATCAACAACGTTTGATTTTT 747459 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATC 178114 ||||| || || | || |||||| | || |||| |||| || ||| | || || ||||| Sbjct 747460 GCCGGCAAGCAATTGGAGGATGGACGTAC-CTTGTCCGACTACAACATTCAGAAGGAATC 747518 Query 178115 AACACTGCA 178123 ||| || || Sbjct 747519 AACCCTCCA 747527 >seq1558 Length=2163639 Score = 122 bits (134), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| ||||| | || || || || || ||| | ||||| || Sbjct 2033945 AAAATGC---AGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAG 2034001 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||||||||| || |||||| || || || || ||||| || ||||| || Sbjct 2034002 CCTTCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCCCA 2034061 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 || || || || | |||||||||||||| || | |||||||| | || |||| |||| Sbjct 2034062 GATCAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCAC-CTTGTCCGA 2034120 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||| ||||||| || ||||| || ||| | ||| || Sbjct 2034121 CTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTG 2034160 >seq2605 Length=276952 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || || || ||||| || ||||| || || || Sbjct 241900 CAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCGGAT 241959 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || || || ||||| || || |||||||| || || || || || Sbjct 241960 ACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCTGATCAACAG 242019 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || |||||||| || | |||||||| | || | || || ||||| | Sbjct 242020 CGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAATATT 242079 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || ||| ||||| Sbjct 242080 CAGAAAGAGTCTACATTGCAT 242100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203680212203364