Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 212 6e-50 seq385 84.2 2e-11 >seq1 Length=5074932 Score = 212 bits (234), Expect = 6e-50 Identities = 472/701 (67%), Gaps = 12/701 (2%) Strand=Plus/Plus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 ||||||||| | | || | ||| || |||||||| ||||| | |||||| || || Sbjct 4719456 CCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAA 4719515 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || | | ||||| | ||| || || || ||| |||||| || ||| Sbjct 4719516 TTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACA 4719575 Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 ||||| ||| || | ||| |||||| | ||| | ||| | | ||||| ||| Sbjct 4719576 GCTTCTGAAATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAAC 4719635 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 || | ||||||||| || ||||||| ||||| |||| ||| ||||| ||||||||| Sbjct 4719636 ATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAAT 4719695 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 ||||| || ||||| || |||||||| | |||||| |||| || || ||| Sbjct 4719696 GTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTG 4719755 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCTTT 17136 ||||| || || || || | ||||| || |||| ||||| | | | | || ||| Sbjct 4719756 AAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTA 4719815 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 | | |||||| | |||| || || || |||||| | ||| || || || Sbjct 4719816 G-AAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAAT 4719874 Query 17197 GGCCT----TAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 || | ||| |||||||| | |||| | | || | ||||||||||| || | || Sbjct 4719875 AGCGTTGAATAAGTAATTTCTTTGTTTC--GAA--TCCTTAATATACGTATCAATTAATA 4719930 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 || |||||||| || || | || ||||| || || |||||||| || ||||| || | Sbjct 4719931 TACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTG 4719990 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGT 17372 | || | | ||| ||||| | ||| ||||| ||| |||||| ||||| || || | Sbjct 4719991 CCTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCAT 4720050 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAA 17432 | |||||||| || || || | || |||||||| | ||| | || || | Sbjct 4720051 CAGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAG-A 4720109 Query 17433 CGCG-CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472 || | ||| || | | |||||| || | ||| ||||| || Sbjct 4720110 CGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTC 4720150 >seq385 Length=177728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA-CA 119919 ||||| || || |||||||| | || ||||| ||| || || ||||| || || || Sbjct 114263 CCCACATAACCTTTGGGATCTCTGCCGTCTAAACTGTACTTGTCATTTAAATAAATGGCA 114322 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 | || | ||| ||| || | | | |||||||||||| ||||| ||||| ||| | Sbjct 114323 GTTTCT-AGCGCCTCTTCTGGTGAGTTGGACCATTCCAGTATCTTTTTTGCCCAATACTT 114381 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 ||| | || | |||||||| |||||||| | || || | ||| || || ||||| | Sbjct 114382 ACGAAGAAATGCGTGCATTTTGCCTTCACGCAACAACTGTATTTGGGCTGCATTCCAGAG 114441 Query 120040 GGGATCGTGTGTA 120052 | ||||| |||| Sbjct 114442 GTCATCGTATGTA 114454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517311423554640