Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 212 6e-50 seq385 84.2 2e-11 >seq1 Length=5074932 Score = 212 bits (234), Expect = 6e-50 Identities = 470/701 (67%), Gaps = 12/701 (2%) Strand=Plus/Plus Query 16016 CCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAA 16075 |||||||| || || | ||| || |||||||| ||||| | | |||||| | ||| Sbjct 4719456 CCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAA 4719515 Query 16076 TTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACC 16135 || || || || | ||||| | ||| | ||||| |||| ||| || || ||| Sbjct 4719516 TTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACA 4719575 Query 16136 GCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAAC 16195 |||||| ||| || || |||| | | ||| | || | | |||| ||| Sbjct 4719576 GCTTCTGAAATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAAC 4719635 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 |||| ||| |||||||| |||||||| || || |||| ||| ||||| || ||||| Sbjct 4719636 ATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAAT 4719695 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCG 16313 || || || |||||| || |||||||| | ||| || |||| |||||| || | | | Sbjct 4719696 GTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTG 4719755 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373 || ||| || || ||||||| ||||| || |||| ||||| | | | || | Sbjct 4719756 AA--GAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACT 4719813 Query 16374 TATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTA 16433 || | |||||| || |||| || || || | |||| | ||| || || | Sbjct 4719814 TAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAA 4719873 Query 16434 TGGCCTTAAACAA----TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGT 16489 | || || || || ||||| | |||| |||| | | |||||||||||||| | | Sbjct 4719874 TAGCGTTGAATAAGTAATTTCTTTGTTTC--GAAT--CCTTAATATACGTATCAATTAAT 4719929 Query 16490 AAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGA 16549 | ||| |||||||| || || | || || || || || ||||||||||||||||| || Sbjct 4719930 ATACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGT 4719989 Query 16550 GCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCG 16609 ||||| | | ||| ||||| | || ||||| | | || |||||||| ||||| Sbjct 4719990 GCCTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCA 4720049 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGA 16669 ||| ||| || || || || || | ||| |||||||| | ||| | | || ||| Sbjct 4720050 TCAGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGA 4720109 Query 16670 ATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTC 16710 |||||| | | |||||| || | ||| ||||| || Sbjct 4720110 CGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTC 4720150 >seq385 Length=177728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATA-CA 119072 ||||| || || ||||||||| | |||||||| |||||| || ||||| || || || Sbjct 114263 CCCACATAACCTTTGGGATCTCTGCCGTCTAAACTGTACTTGTCATTTAAATAAATGGCA 114322 Query 119073 GACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACAT 119132 | || | ||| ||| || | || |||||||||||| ||||| ||||| ||| | Sbjct 114323 GTTTCT-AGCGCCTCTTCTGGTGAGTTGGACCATTCCAGTATCTTTTTTGCCCAATACTT 114381 Query 119133 ACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATAG 119192 ||| | | | |||||||||| || || | || ||| | ||| || | ||||| || Sbjct 114382 ACGAAGAAATGCGTGCATTTTGCCTTCACGCAACAACTGTATTTGGGCTGCATTCCAGAG 114441 Query 119193 AGGATCGTGTGTA 119205 ||||| |||| Sbjct 114442 GTCATCGTATGTA 114454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511182997769360