Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq28 122 7e-23 >seq28 Length=1372515 Score = 122 bits (134), Expect = 7e-23 Identities = 435/673 (65%), Gaps = 8/673 (1%) Strand=Plus/Minus Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608 |||||||| || | || ||| ||| | ||||| ||| || | | || | ||| Sbjct 390533 GATCGAACTGGTGTTGGGACGAAATCAGTTTTTGGTGCTCAAATGCGCTTCGATCTCCGA 390474 Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668 ||| ||||| | |||||||||||||| || || ||| | || |||| ||||| ||| Sbjct 390473 AATAGTTTTCCATTATTAACTACAAAGCGAGTATTCTGGCGTGCGGTCGCTGAAGAATTG 390414 Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATA 18728 | |||||| | | || ||| || | ||| ||| | ||| |||| |||||| Sbjct 390413 CTGTGGTTTGTTCATGGTCAAACAGACGCTAAAATACTTCAAGAAAAAAATATTCACATA 390354 Query 18729 TGGGATATATACGG--ATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACA 18786 |||||| | || | |||| | | || || | | ||| || | ||| | Sbjct 390353 TGGGATGGAAACAGTAATCGTG--AGTTCTTAGACAAATGTGGGTTTTCCGACAGAGAAG 390296 Query 18787 CGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAG 18846 || || || ||||| |||| || || |||||| | |||||||| || | || | | Sbjct 390295 AAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCCAAGTACAGAA 390236 Query 18847 ACTGTCAATCAAACT-ATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 | || ||| | ||| | | | | || || ||||| || || || || || ||| Sbjct 390235 ATTG-CAAGGACACTTACAAAGATGAGGGTATAGATCAACTTCAGCAAGTAATTGACACA 390177 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 | | || || ||| | ||||| || || || || ||||||||||| ||||| Sbjct 390176 GTCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCTTGGAATCCAGTCGATATT 390117 Query 18966 CCCTTAATGGTACTACCTCCATGTCACA-CGTTATGTCAGTTTTACGTTGCAAACGGTGA 19024 || ||||| ||||| || ||||| | ||| || |||| ||||| || || || Sbjct 390116 CCTCAAATGGCTCTACCACCTTGTCATTGCCTTACA-CAATTTTTTGTTGCCAATGGAGA 390058 Query 19025 ATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACAT 19084 ||||| || ||| ||||||| | | || ||||| | || ||||| || || || Sbjct 390057 GTTATCTTGTCAATTATACCAACGCAGTGCTGACATGGGATTGGGTGTACCATTTAATAT 389998 Query 19085 TGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGA 19144 ||| || || | ||||||||||| | || ||| |||| | || | || || Sbjct 389997 TGCCTCGTACGCTTTACTTACCTACATGATTGCTCATATTACTGATCTCCGGCCAGGGGA 389938 Query 19145 TTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGT 19204 ||| | || || |||| ||||||||| | || |||||||| || || ||| || Sbjct 389937 TTTCGTCCACACTTTGGGTGATGCACATGTCTATAATAATCATATTGAAGCGCTAACAGA 389878 Query 19205 GCAGCTAGCTCGA 19217 ||| || | ||| Sbjct 389877 ACAGTTAACACGA 389865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399327753566910