Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 477 1e-129 seq1 304 2e-77 >seq11 Length=2963766 Score = 477 bits (528), Expect = 1e-129 Identities = 1261/1892 (67%), Gaps = 54/1892 (3%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| || ||||| || | | | ||||||||||| || | || ||||| || Sbjct 1983220 TTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCA 1983161 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| ||||| |||| |||||||| || ||| || |||||| ||| | || Sbjct 1983160 GTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGT 1983101 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || || | || || || | || ||||||||||||||||| || || | ||||||||| Sbjct 1983100 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCC 1983041 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037 ||||| || || || | ||| ||||||| |||||| || || |||| | |||| Sbjct 1983040 ATTTTGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGT-ATATG 1982982 Query 53038 TTCTGG-AAGGTTT--GTATTCTGAATAGATCCACCATCTA-CCATAATCCTATTCTTGA 53093 | ||| | || || | || || || || || | | ||| ||||| |||| || | Sbjct 1982981 CTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGA-CTAGTTATAATATTATTTTTCA 1982923 Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACT 53152 | ||||||| ||| || ||| |||| | | | ||| || || |||| || ||| Sbjct 1982922 TATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAG-TGATGATTTACAACT 1982864 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 |||||||| || || | || | || || || ||||| || || ||||| | ||| Sbjct 1982863 TGAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGAC 1982804 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 ||||| || |||| |||||| || ||||| ||||| ||||| || || | || ||| Sbjct 1982803 TCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAG 1982744 Query 53273 TTTCTAAGACCGTATGTT--CTGATTTTATCTTTTA--GAGGTTCCCAATTCCAAAGATC 53328 || | || || ||||| | ||||| || || | ||| ||||||||||||||| Sbjct 1982743 TTACGAACGCC--ATGTTGCTTAATTTTCTCCTTCAATTCGGT--CCAATTCCAAAGATC 1982688 Query 53329 CGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTAC 53388 ||| ||||||||||| ||||| || || ||||| Sbjct 1982687 ACTTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTAC 1982628 Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 |||||| || || | || | || || |||| ||| ||||| | || | ||||| || Sbjct 1982627 ATATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATA 1982568 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 ||||| |||||||| || | | ||||| |||||| || || ||||||| Sbjct 1982567 GTAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATA 1982508 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | | | ||| || ||||| || || ||||| || ||||||||||| || | |||||| Sbjct 1982507 ACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCT 1982448 Query 53569 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628 ||| || | | || || || || ||||||| |||||| ||||| |||||||| | Sbjct 1982447 GAAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAA 1982388 Query 53629 GTTTC-TGACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA--TTGTC-C 53682 || | || | ||| ||||| || || || ||| ||| | || || | Sbjct 1982387 ATTACGTGTAACGGTCTTGGTGACC---TCTTTGAGGCGCTTAAAGTCATACGTTTTCTC 1982331 Query 53683 ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 | | ||||||||||||||||| || || || | ||||| || |||||||||| | Sbjct 1982330 GGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGG 1982271 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 ||| ||||| | || || || || | |||||||||||| || || || | ||| || Sbjct 1982270 TGCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTG 1982211 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 |||||||||||| ||||| ||||| ||||| | ||| | || || ||||| || | Sbjct 1982210 CTGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTAC 1982151 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGAC-ACGAGCCTTTA--TTATAGATTTGTATCT 53919 || ||||| ||||| || ||| | ||| | || |||| || | ||| | | | Sbjct 1982150 TTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACCTTCT-TATTAGCACGT 1982093 Query 53920 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979 | || || ||| ||| ||||||| ||||||||| || ||||| || | | || Sbjct 1982092 CCTTCCT-GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAA 1982034 Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT--CCTTC-ACTCGTTT 54036 |||||||||| | || ||||| | |||||| ||| |||| |||| || ||| | Sbjct 1982033 ACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCT---TCATTGGCTTCGACACGTCT 1981977 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTT 54096 |||||| |||||||| ||||| ||||| || | |||||||| | || || || || Sbjct 1981976 CATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTT 1981917 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || || || || || | ||| | || | | ||||||| |||||| ||||||| ||| Sbjct 1981916 ACCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTA 1981857 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 |||| | | || |||||||| || || ||||| | || | || ||||| Sbjct 1981856 GATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATT 1981797 Query 54217 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGC 54275 | |||| || |||||| | | |||||| || | ||||| || |||| | || || Sbjct 1981796 GAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCA---ATCGC 1981740 Query 54276 --TTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 | || | || || || || ||| ||| |||||| || || || || ||| | Sbjct 1981739 AGTGCCTTTCGCGCGTATGCAATGTAC--ATT--TAGACCAATACCACCAGCAGATTTTG 1981684 Query 54330 AGATTAATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 54388 | || || || ||| | | | | | | | | || || || || ||| |||| |||| Sbjct 1981683 AAATCAAAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGAATCGTCCACCATG 1981625 Query 54389 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 54448 |||||| || || |||| ||| | | | || | ||| || | || || Sbjct 1981624 GTAAGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGC 1981565 Query 54449 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATA 54508 ||||| || ||||| | || ||||| | ||||| || || || |||| || ||| Sbjct 1981564 GAAGCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATA 1981505 Query 54509 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 54568 || ||| || || | || || ||||||||||| ||||| |||| ||||| || Sbjct 1981504 TCTTCACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATT 1981445 Query 54569 TTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 54628 ||| || | || ||||| ||||| ||| | ||||||||||||||||| ||||| Sbjct 1981444 TTGCCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTGTAA 1981385 Query 54629 GAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 ||| || || || || || ||| | ||||| Sbjct 1981384 CCAAAATCGCGGTCATATATGATAGCAGAGTT 1981353 >seq1 Length=5074932 Score = 304 bits (336), Expect = 2e-77 Identities = 502/722 (70%), Gaps = 3/722 (0%) Strand=Plus/Plus Query 23948 TCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007 ||||| ||| || ||| | ||| || ||||| || ||||| ||| | || ||| Sbjct 4719455 TCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACA 4719514 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 |||||| || || | ||||| || | ||| |||| | |||||||| ||||| | || Sbjct 4719515 ATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAAC 4719574 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 24127 || |||| || || | | ||| | ||| ||| | | ||||||| || Sbjct 4719575 AGCTTCTGAAATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAA 4719634 Query 24128 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 24187 ||| ||||||||||| || || ||||||||||| |||| |||| ||| || ||||| Sbjct 4719635 CATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAA 4719694 Query 24188 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 24247 || | || ||||||| || || || ||||||||||| || || ||||| ||| Sbjct 4719695 TGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACT 4719754 Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--CTG 24305 |||||||| ||||| || || ||||| ||||| | | ||| ||| | ||| || Sbjct 4719755 GAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTT 4719814 Query 24306 TCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 | | | |||| | |||||||| ||||| ||||| |||||||||||| || Sbjct 4719815 AGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAAT 4719874 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 ||| || || | || ||| ||| || ||| |||| ||| |||||||| || | ||| Sbjct 4719875 AGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACT 4719934 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||||||||| ||||| | ||||| || || ||||||||||| ||||| || | ||||| Sbjct 4719935 ATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTC 4719994 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 |||| || |||||| | || ||||| |||||||||||||||| || || ||| Sbjct 4719995 TGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGA 4720054 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 24604 || || || || || || || ||| || |||| | ||| | || || Sbjct 4720055 TGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGC 4720114 Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 |||||||| ||||||||||| | ||| ||||| || |||||||| || ||||| ||||| Sbjct 4720115 CCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGC 4720174 Query 24665 CT 24666 || Sbjct 4720175 CT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593452955819040