Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 1e-14 >seq4 Length=3596895 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 ||||||||||| ||| | || || ||||| ||||| ||||| || || ||||| Sbjct 3259166 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 3259225 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || |||| || ||| || |||||||| | ||| |||| Sbjct 3259226 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 3259285 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 |||||| | | |||||||| || || ||||||||||| || || |||||||| Sbjct 3259286 CAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAC 3259345 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||| ||||| ||||| |||| | || |||| || || Sbjct 3259346 AACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 3259395 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || ||| | || |||||||| ||||| ||| || || | Sbjct 3261295 ATGCAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCG 3261354 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| ||||| || || | || ||||||| Sbjct 3261355 GACACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAA 3261414 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || ||||| || || || ||||| || ||| |||| || |||| |||||| Sbjct 3261415 CAACGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAAT 3261474 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| || || || ||||| |||| | || ||||| Sbjct 3261475 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 3261521 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || | || ||||||||||| ||| ||| || ||| || Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| || || ||||| ||||| | || ||||||| Sbjct 3260899 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAA 3260958 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || ||||| || || || || ||||||| || || ||||||| || Sbjct 3260959 CAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAAC 3261018 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || |||||||||||| |||| || || || || || || Sbjct 3261019 ATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261065 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || | || ||||||||||| ||| ||| || ||| || Sbjct 3260081 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260140 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| || || ||||| || || | || ||||||| Sbjct 3260141 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAA 3260200 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | ||||| || |||||||| ||||||| || || ||||||| || Sbjct 3260201 CAACGTTTGATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAAC 3260260 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || ||||| || |||||||||||| |||| || || Sbjct 3260261 ATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCG 3260295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428147033951690