Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq4 116 4e-21 seq15 107 2e-18 seq138 82.4 8e-11 >seq1 Length=5074932 Score = 194 bits (214), Expect = 2e-44 Identities = 380/557 (68%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || ||||||||||| || ||||| || || || || || || | | || | Sbjct 4720176 AGGCAGAAGCATCGTTCTGGACAGTTGAGGAAGTAGATCTTTCTAAAGATATGGATGATT 4720117 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| || | | || || || || |||||||| |||||| | ||||| ||||||| Sbjct 4720116 GGGCACGTCTCACTGATAATGAACGACATTTCATTTCACACGTGTTAGCCTTCTTCGCCG 4720057 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | || || || || || || ||| | || || || ||| || || ||||| || Sbjct 4720056 CATCTGATGGTATTGTGAATGAAAATTTAGTTGAACGCTTCAGCCAAGAAGTGCAAGTTA 4719997 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||| || ||||| || || ||||| || ||||| || ||||||| Sbjct 4719996 CAGAGGCACGTTGCTTCTATGGATTTCAAATTGCTATGGAAAATGTGCATTCTGAAATGT 4719937 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA--GGAGAAGCTCCGTTTGTTGAA 116952 || | | || || ||||| | |||| | |||| | | || || || Sbjct 4719936 ATAGTATATTAATTGATACGTATATTAAGGATTCGAAACAAAGAAATTAC--TTATTCAA 4719879 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 ||| || ||||| ||||| |||| |||| | ||||| || ||||| || ||||| Sbjct 4719878 CGCTATTGAGACAATGCC-TGCGGTAAAGCGTAAGGCTGATTGGGCACTTGCTTGGATTT 4719820 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | | |||| ||| || || || | | || || || || || || ||| | | Sbjct 4719819 CTTCTAAGTCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCCGCTGTTGAAGGCATTT 4719760 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| |||||||| || | || |||||||| ||||||||||| | ||||| ||| Sbjct 4719759 TCTTCAGTGGCAGTTTTGCTTCGATCTTTTGGCTTAAGAAACGCGGTTTAATGCCTGGCT 4719700 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 |||| || || || || ||||| | || |||||||| ||||| ||||| || |||| Sbjct 4719699 TGACATTTTCTAATGAACTAATCTCACGAGATGAGGGTCTACATTGTGACTTCGCATGTT 4719640 Query 117192 TGCTGTTCAAGCATTTG 117208 | ||||| | |||||| Sbjct 4719639 TAATGTTCCAACATTTG 4719623 >seq4 Length=3596895 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||||||||||||| | || || || || | Sbjct 3260081 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260140 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | |||| || || | || || ||||| || || | || || Sbjct 3260141 GATACCATTGAGAACG-TTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCA 3260199 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| ||||||||| |||| |||| |||||||| ||| || || Sbjct 3260200 ACAACGTTTGATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAA 3260259 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| ||| | || || || | || ||||| Sbjct 3260260 CATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCG 3260295 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||||||||||||| | || || || || | Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | |||| || || | || || || ||||| || | || || Sbjct 3260899 GATACCATTGAGAACG-TTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCA 3260957 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||| || || ||| |||| |||| |||||||| ||| || || Sbjct 3260958 ACAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAA 3261017 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || || || | || ||||| ||| | || || Sbjct 3261018 CATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261065 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||||||||||||| | || || ||| | || Sbjct 3261067 ATGCAAATTTTCGTGAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTTGAACCATCC 3261126 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | || || | || || || ||||| ||| | || || Sbjct 3261127 GACACCATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAA 3261186 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || || || |||| |||| |||||||| ||||||||| Sbjct 3261187 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAAC 3261246 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || ||||| | || || || | || ||||| ||| | || || Sbjct 3261247 ATTCAAAAGGAATCAACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261293 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || ||||| |||||||| | || || ||| | Sbjct 3259166 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 3259225 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | ||| | || | || |||| |||||||| || |||||| | || Sbjct 3259226 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 3259285 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | |||| || || || || ||||| |||| |||||| | ||| ||| Sbjct 3259286 CAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAC 3259345 Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||||||| | || || ||| Sbjct 3259346 AACATCCAGAAGGAGTCTACACTTCAT 3259372 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | ||||| ||||| || || | || || ||| | || Sbjct 3259625 ATGCAAATCTTCGTTAAAACATTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 3259684 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | ||| |||| ||| ||||| ||||| || || | || || Sbjct 3259685 GATACAATTGAAAACGTTAAAGCCAAAA-TTCAGGACAAGGAGGGTATTCCTCCAGATCA 3259743 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||| || || || |||| |||| || ||| | ||||||||| Sbjct 3259744 ACAACGTCTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGTACCTTGTCCGACTACAA 3259803 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || || |||| | |||||| | || || Sbjct 3259804 CATCCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3259851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | ||||| ||||||||||| | || || || | || Sbjct 3259397 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 3259456 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | ||||||| || || || || |||||| | || || Sbjct 3259457 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 3259516 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||||||| |||| || | ||||| || ||| || || Sbjct 3259517 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAAT 3259576 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||| |||| | ||| |||| | |||||| | || || Sbjct 3259577 ATTCAGAAGGAATCCACTTTACATTTAGTTCTACGCTTGCGTGGTGG 3259623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || |||||||||||| | || || ||| | || Sbjct 3260350 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACCATCACCTTGGAAGTTGAACCATCC 3260409 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| | || || | || || ||||| |||| | || || Sbjct 3260410 GACACCATAGAAATG-TCAAAGCCAAGATCCAAGATAAGGAGGGATTCCCACCAGATCAA 3260468 Query 40810 CAACGACTCATCTACGCGGGCAAAC---AGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | |||| ||| ||||||| || |||||||| | || ||||||| Sbjct 3260469 CAACG-TTGATCTTCGCCGGCAAACTGGAGATGGACGACTTG-------TC--CGACTAC 3260518 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| | || || || |||| | |||||| | || || Sbjct 3260519 AACATCCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3260568 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || |||||||| || || | || || || | | Sbjct 3259853 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATTACTTTGGAAGTAGAGCCTTCA 3259912 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | || || ||||| ||||| | || || Sbjct 3259913 GATACCATTGAGAACGTT-AAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCA 3259971 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || || || |||| |||| |||||||| |||||||| Sbjct 3259972 ACAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAA 3260031 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||||||| | || || || |||| | |||||| | || || Sbjct 3260032 CATTCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3260079 >seq15 Length=2140121 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || || ||||||||| | || ||||| | | Sbjct 600445 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 600386 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||| | ||||| | ||||||||||| |||||| | ||||| Sbjct 600385 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGACCA 600326 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| ||| || ||||| | || || | |||||| | ||||||||| Sbjct 600325 ACAGCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACTACAA 600266 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| || |||||| | || || || Sbjct 600265 CATTCAAAAGGAGTCAACACTCCA 600242 >seq138 Length=433312 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| || |||||||| |||||||| | || || ||| | | Sbjct 21528 AATGCAAATTTTCGTAAAAACCCTTACGGGCAAGACCATCACTCTTGAGGTTGAACCTTC 21587 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || | |||| ||||||| || || || || || || | || || Sbjct 21588 GGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGTATTCCGCCAGATCA 21647 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | || || |||||| |||| || | ||||| | ||||| || Sbjct 21648 ACAGCGTCTAATTTTTGCCGGAAAACAGTTGGAGGATGGTCGCACATTGGCTGACTATAA 21707 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| ||| | ||| | ||| |||| Sbjct 21708 TATTCAGAAAGAGTCTACGTTACATTTAGT 21737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514986076192480