Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq28 156 6e-33 seq138 152 8e-32 seq4 136 6e-27 seq15 105 1e-17 >seq28 Length=1372515 Score = 156 bits (172), Expect = 6e-33 Identities = 420/636 (66%), Gaps = 15/636 (2%) Strand=Plus/Plus Query 205329 TAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATT 205388 |||||| ||||| | | ||| | ||| ||| |||| | ||| | | ||||||||| Sbjct 389841 TAATTTAGGAAACGCCCTAGGTTTTCGTGTTAACTGTTCTGTTAGCGCTTCAATATGATT 389900 Query 205389 AACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAA 205448 | ||| | |||||||| ||| | | | || | || || ||| | || ||| | Sbjct 389901 ATTATAGACATGTGCATCACCCAAAGTGTGGACGAAATCCCCTGGCCGGAGATCAGTAAT 389960 Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| |||||||| || || | |||| || |||| ||||||||||||||| || || Sbjct 389961 ATGAGCAATCATGTAGGTAAGTAAAGCGTACGAGGCAATATTAAATGGTACACCCAATCC 390020 Query 205509 CATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTAT-TATTAATTACATGAA 205567 ||| ||||| | ||| || | ||||| |||||| | | ||| ||| || Sbjct 390021 CATGTCAGCACTGCGTTGGTATAATTGAC----AAGATAACTCTCCATTGGCAACAAAAA 390076 Query 205568 ATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGG 205627 ||||| || |||||||||||||||| | |||| | || ||| | |||||||| | Sbjct 390077 ATTGTGTAAGGCAATGACAAGGTGGTAGAGCCATTTGAGGAATATCGACTGGATTCCAAG 390136 Query 205628 CTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTA 205687 | | | ||| ||| || | | || || ||| | | | | | || | || | Sbjct 390137 CAGACATTATAATACGTCGATCATTTGGATTGTTTCTGACTGTGTCAATTACTTGCTGAA 390196 Query 205688 ATTGATCAAATCCTTGATTTGTATAATTTGTATCCAT---ATCAATATATTTAGCACCAA 205744 |||||| | || | || | | ||| || ||| | || | || || || |||| Sbjct 390197 GTTGATCTATACCCTCATCTTTGTAA---GTGTCCTTGCAATTTCTGTACTTGGCCCCAA 390253 Query 205745 AATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAAC 205804 |||||||||| ||||||||||||||||| |||| ||||||||||| ||| || ||| | Sbjct 390254 AATGACGCCACTGAAAACCATAAACTGGGCCTAGATCACCTTCTTCTCTGTCGGAAAACC 390313 Query 205805 CACGtttttttatatatttta--atgatccattttcatcccaaatatggattcctttatt 205862 ||| ||| | || | | | | || | | ||| ||||||| || || || ||| | Sbjct 390314 CACATTTGTCTA-AGAACTCACGATTA-CTGTTTCCATCCCATATGTGAATATTTTTTTC 390371 Query 205863 ttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCC 205922 || || || || | | ||| ||| | |||||| | ||||||||| | | | Sbjct 390372 TTGAAGTATTTTAGCGTCTGTTTGACCATGAACAAACCACAGCAATTCTTCAGCGACCGC 390431 Query 205923 TCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 | ||| || | | ||||| || ||||||||||| Sbjct 390432 ACGCCAGAATACTCGCTTTGTAGTTAATAATGGAAA 390467 >seq138 Length=433312 Score = 152 bits (168), Expect = 8e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 |||||||||| || |||| || || || ||||| || || ||| | ||| ||||| | Sbjct 21527 CAATGCAAATTTTCGTAAAAACCCTTACGGGCAAGACCATCACTCTTGAGGTTGAACCTT 21586 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| || | || |||||||||||||| |||||||| || || |||| Sbjct 21587 CGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGTATTCCGCCAGATC 21646 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| | || |||||||| |||||||| || |||||| |||| ||||| | || |||| Sbjct 21647 AACAGCGTCTAATTTTTGCCGGAAAACAGTTGGAGGATGGTCGCACATTGGCTGACTATA 21706 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||| ||||| || || || ||||| || | ||| | ||||||| Sbjct 21707 ATATTCAGAAAGAGTCTACGTTACATTTAGTCCTTCGTCTTAGAGGTGG 21755 >seq4 Length=3596895 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | ||| |||| | Sbjct 3259397 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 3259456 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||| ||||| || || || |||||| Sbjct 3259457 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 3259516 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||| || |||||| | || ||| | ||||||||| Sbjct 3259517 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAAT 3259576 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||||| ||||| ||| |||| || || |||||||| Sbjct 3259577 ATTCAGAAGGAATCCACTTTACATTTAGTTCTACGCTTGCGTGGTGGTAT 3259626 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | |||||||| || ||||||||||| ||| | || |||| || Sbjct 3261295 ATGCAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCG 3261354 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| || ||||||||||| || || || ||||| |||||| Sbjct 3261355 GACACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAA 3261414 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || || ||| | |||||| | ||||| || || || ||| Sbjct 3261415 CAACGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAAT 3261474 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || ||||| || | |||||||| ||||| | || || || Sbjct 3261475 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 3261521 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || ||||||||||| ||| | || | || | Sbjct 3259853 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATTACTTTGGAAGTAGAGCCTTCA 3259912 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || || || |||||||| || || || ||||| |||||| Sbjct 3259913 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 3259972 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || || || || || ||||| ||||| | || || | ||| || || Sbjct 3259973 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAAC 3260032 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || |||||||| | || || || | || || || |||||||| Sbjct 3260033 ATTCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGGTAT 3260082 >seq15 Length=2140121 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || |||| || || || || || ||||| | || | Sbjct 600445 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 600386 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| ||||| ||||| ||||| ||||| || || || || Sbjct 600385 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGACCA 600326 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || |||||||||||||| ||| |||| || || || || || Sbjct 600325 ACAGCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACTACAA 600266 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| | || |||||| | ||| | ||||||||||| Sbjct 600265 CATTCAAAAGGAGTCAACACTCCACTTGGTTCTGCGTCTTCGAGGTGGTAT 600215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755114175046400