Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15 134 1e-26 seq4 113 4e-20 seq138 111 1e-19 >seq15 Length=2140121 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| ||||| |||||||||||||| ||| || ||||| ||| || Sbjct 600236 ACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCT 600295 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| ||| |||| | |||||| || || || || || ||||| |||||| Sbjct 600296 AATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCTTGG 600355 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||||| |||||| | ||||||||| | ||| | || || Sbjct 600356 ATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTA 600415 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||| || ||||||||||| Sbjct 600416 CCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 >seq4 Length=3596895 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | |||||| |||| ||| || || || || || ||||| ||| | Sbjct 3261521 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 3261462 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||||||| || || || ||| |||| ||||| || ||||| || || Sbjct 3261461 AAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3261402 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||||||||| ||| ||| || || || | || | ||||||| ||| || Sbjct 3261401 ATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACT 3261342 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||||||||| || || || || ||||| ||||| Sbjct 3261341 TCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || || | ||| |||||||| | ||||||||||| || ||||| |||||| Sbjct 3261067 TACCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGG 3261008 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| || || | ||| || || ||| |||| ||||| || ||||| || | Sbjct 3261007 ACAGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTG 3260948 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| ||||| ||| || || ||||| | || | ||| || | | ||| | Sbjct 3260947 GAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTA 3260888 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | |||||||| || || || || || || || ||||| Sbjct 3260887 CTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| |||||||| | ||||||||||| || ||||| |||||| Sbjct 3260309 TACCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGG 3260250 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| || || | |||||| || ||| |||| | ||| || ||||| || | Sbjct 3260249 ACAGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 3260190 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||| ||| || || ||||| | || | ||| || | | ||| | Sbjct 3260189 GAATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTA 3260130 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | |||||||| || || || || || || || ||||| Sbjct 3260129 CTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || || | ||| |||||||| | || || || |||||||||||||| || Sbjct 3261295 TACCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTG 3261236 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||||| | || || || ||| |||| | ||| || ||||| || | Sbjct 3261235 ACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGG 3261176 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | ||||| ||||| || || || ||| || | ||| | |||||| | || | || Sbjct 3261175 GAATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGT-TCA 3261117 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||||||||| || || || || ||||| ||||| Sbjct 3261116 ACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || ||||| || |||||| || ||||| |||||| | |||||| ||| Sbjct 3259593 GTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCA 3259534 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||| || ||||| || || || || ||||| ||| |||||| ||| Sbjct 3259533 GCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTG 3259474 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | ||| ||||| | || | ||||| || |||| |||| Sbjct 3259473 ACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTT 3259414 Query 118722 TTTACAAAAATCTGCATG 118739 || || |||||||||||| Sbjct 3259413 TTGACGAAAATCTGCATG 3259396 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||||| || || || || || |||||||| ||| || || || ||||| Sbjct 3259833 ACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCC 3259774 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || || ||| |||| ||||| || ||||| ||||| || ||||||||||| | Sbjct 3259773 AATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGA 3259714 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| |||||| | ||| | || || | || ||||| | || | ||||| Sbjct 3259713 ATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTA 3259654 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| || || || ||||| Sbjct 3259653 CCCGTCAATGTTTTAACGAAGATTTGCAT 3259625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||||||| || || |||||||||||| || ||||| || || Sbjct 3259377 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 3259318 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || || |||| | ||| || ||||| || || || || || |||||| | Sbjct 3259317 AGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 3259258 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || |||||| | ||| | || || | || | || ||||| | || | || || Sbjct 3259257 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGT-TCAACCTCCAGAGTGATGGTCTT 3259199 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || || || ||||| Sbjct 3259198 GCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 >seq138 Length=433312 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||||||||| ||||| || || || || ||||| |||||| | ||||||||| Sbjct 21725 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCCAACTGTTTTCCG 21666 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || |||||||| ||||| || || || || ||||| ||| |||||| ||| Sbjct 21665 GCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGAATTTTGGCCTTA 21606 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || ||||| | || |||| || ||||| | || | || ||||| || || ||| Sbjct 21605 ACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTT 21546 Query 118722 TTTACAAAAATCTGCATGGCT 118742 ||||| ||||| ||||| ||| Sbjct 21545 TTTACGAAAATTTGCATTGCT 21525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433639010025016