Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq385 100 5e-16 >seq385 Length=177728 Score = 100 bits (110), Expect = 5e-16 Identities = 208/308 (68%), Gaps = 20/308 (6%) Strand=Plus/Minus Query 189257 GTTGAAACGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTAC 189316 || ||| ||||| || ||| ||||||||| | ||| | |||||||||| ||||| Sbjct 119169 GTGGAAGCGTTTTGCGAAGAAGCTATTGTAAGACGTGAATTGGCGGATAATTTCTGTTAT 119110 Query 189317 TATAACAAACATTATGATAGTATCCA--GTCTACTCATTCATGGGCCAGAAAAACATTAG 189374 || || |||| || || ||| || | |||||| || | ||||| ||||| ||| Sbjct 119109 TACAATGAACACTACGACAGTCTCAAAGGTCTAC--ATGCTTGGGCAGCTAAAACGCTAG 119052 Query 189375 AAGATCACATTAATGATCCTAGAAAGTATATATATTCCATTAAACAAC--------TCGA 189426 ||||||| ||| ||| ||| | ||| ||| ||| | || Sbjct 119051 AAGATCATCGTAAAGAT------AAGCGCTCACCTTC--TTACACATTGGCTGAGTTTGA 119000 Query 189427 AAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGG 189486 |||| || || || ||||||||| || ||||||| ||| || || | ||||| Sbjct 118999 GCAAGCTCGTACCCACGACGATCTATGGAATGCAGCACAAATACAGTTGTTGCGTGAAGG 118940 Query 189487 AAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAAC 189546 ||||||||| ||||| | || ||||||||||| |||||||| || || ||| | ||| Sbjct 118939 CAAAATGCATGGTTTTCTTCGTATGTATTGGGCAAAGAAGATCCTGGAGTGGTATTCAAC 118880 Query 189547 ACCTGAAG 189554 ||| |||| Sbjct 118879 ACCCGAAG 118872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922779076527920