Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 1e-15 seq1401 86.0 9e-12 seq138 86.0 9e-12 >seq4 Length=3596895 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||||||||| ||||| || ||||||||||| || || || | | ||| || Sbjct 3259605 ACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCC 3259546 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| ||||| |||||||| | ||| ||||| || || |||||||| |||||||| Sbjct 3259545 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTG 3259487 >seq1401 Length=52613 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 10471 TAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAA 10530 ||||| | || || ||||| ||| |||| |||||||| | || ||||| || | || | Sbjct 48884 TAGCTGTTAAGAACTTTATAGATGTTGGTGCTGGAGTCGTAGATGAAGACTACCGTGGTA 48825 Query 10531 ATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATA 10590 | |||| || |||||||||||||||| |||||||||| | | || |||| || Sbjct 48824 ACTTGGGCGTTGTATTATTTAATCATTCAGATGAAGATTTCGAAGTGAAACGAGGTGACC 48765 Query 10591 GAATATCTCAATTAATATGTGA 10612 | || ||||||| || ||||| Sbjct 48764 GCATTGCTCAATTTATCTGTGA 48743 >seq138 Length=433312 Score = 86.0 bits (94), Expect = 9e-12 Identities = 151/228 (66%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||| | | || |||||||| ||||| ||||| |||||||| || | Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || || |||||||| |||||||| | | || ||||| || ||| Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| |||||| ||| ||| || Sbjct 21635 ATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACC 21576 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || ||||| || || || || | ||||| | ||| ||||||||| Sbjct 21575 TCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743189972892160