Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1 206 2e-48 >seq1 Length=5074932 Score = 206 bits (228), Expect = 2e-48 Identities = 499/747 (67%), Gaps = 15/747 (2%) Strand=Plus/Plus Query 16031 CAATAGTATTTATCGCA-TCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATA 16089 ||||| || | || || ||||| ||| | | || | ||| ||||||||||| ||||| Sbjct 4719437 CAATATTACCTTTCCCACTCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATA 4719496 Query 16090 CTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 | ||||| | ||| ||||| || ||||| ||||| || | || || ||||| || Sbjct 4719497 ATCAGACATTAGTTTACAATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAA 4719556 Query 16150 AtttttttCTATATTAACCGCTTC---AATGATTATATCTCTTACTACACTATTTAACGG 16206 | || || || |||| ||||| ||| ||| | | || | || || || || Sbjct 4719557 TTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAACAATTCGTTCATTACTT---GG 4719613 Query 16207 AGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCT 16266 | || || |||| ||||||| ||| || || |||||||| | || || || | Sbjct 4719614 TTTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCG 4719673 Query 16267 ACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAA 16326 |||| || || |||||||| | || ||||||| || ||||| |||| |||||| Sbjct 4719674 TGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAA 4719733 Query 16327 TATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCG 16386 || | ||||| ||| ||||| || |||||||| ||||||||||||| | || Sbjct 4719734 GATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACG 4719793 Query 16387 CTCACCGTACGTT---CTAtttttactttctatccattttttagcccaatttgctttttg 16443 ||||| | ||| | | || | ||||| ||||||| || || | Sbjct 4719794 TTCACCAAA-GTTGGCCGACTTAGAAGAA--ATCCAAGCAAGTGCCCAATCAGCCTTACG 4719850 Query 16444 -tttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTA 16502 |||| | ||| ||| |||| || || || ||||| |||||| ||| ||| ||| Sbjct 4719851 CTTTACCGCAGG-CATTGTCTCAATAGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCT 4719909 Query 16503 AAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCT 16562 |||||| ||||| |||| || |||||||||||| ||||| | ||| ||||| || || | Sbjct 4719910 TAATATACGTATCAATTAATATACTATACATTTCAGAATGCACATTTTCCATAGCAATTT 4719969 Query 16563 GAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTA 16622 |||| ||||| ||||| | || || | | ||| ||||| | || | ||| ||| Sbjct 4719970 GAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTA 4720029 Query 16623 AGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAt 16682 | ||||| || || || ||||| || || || || || | | |||| ||| |||| Sbjct 4720030 AATTTTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAAT 4720089 Query 16683 ttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 | ||| ||||| | || | ||| ||| | |||||| || | ||| || || | Sbjct 4720090 GTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCT 4720149 Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCT 16769 | || ||||| || || || | |||| Sbjct 4720150 CAACTGTCCAGAACGATGCTTCTGCCT 4720176 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15883 ACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT 15942 |||||| |||||| |||| | |||||||||||| || ||| | | ||| | Sbjct 4719222 ACTTTAGAAATCAGCGTCTAACGTAAACACATTATCCATTCGATTAGCAGTTACTCCCCA 4719281 Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| || ||||||| |||| |||||||||| || |||||||| || |||||||||||| Sbjct 4719282 TTTCTGGTATTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTCCCGTCTAATGAAATAAG 4719341 Query 16003 TTCCATAAAATCAAAAGGATT 16023 |||||| ||| ||||| || Sbjct 4719342 TTCCATGAAACTGAAAGGGTT 4719362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302724882800