Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 230 2e-55 >seq1 Length=5074932 Score = 230 bits (254), Expect = 2e-55 Identities = 480/712 (67%), Gaps = 10/712 (1%) Strand=Plus/Plus Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || ||||| | || || | ||| || | || || ||||| | |||||||| | |||| Sbjct 4719456 CCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAA 4719515 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 |||||||| |||| || || || | | ||||| ||||||| || || | ||| Sbjct 4719516 TTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACA 4719575 Query 14138 GCCTCGTTTATAATAATCGTAATAATT---TCATTAGAAGGAGGATATTTTAGATGTTTA 14194 || || | ||| || || |||| |||||| || | | | | ||||| Sbjct 4719576 GCTTC---TGAAATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGG 4719632 Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 || |||||||| || || |||||||| || |||||||||| || ||||| || ||| Sbjct 4719633 AACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAA 4719692 Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 ||||| || || ||||| || || ||||| || | |||||| || | ||| || || Sbjct 4719693 AATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCA 4719752 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 ||||| || || ||||| || ||||| || |||| ||||| ||||| || Sbjct 4719753 CTGAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGAC 4719812 Query 14375 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434 || || ||||| ||||| |||| || || | | |||||| ||| Sbjct 4719813 TTAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCA 4719872 Query 14435 ATAGCATTAAATAAATG--TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14492 ||||| || ||||| | ||| || | | | | ||| ||| || |||||||| | || Sbjct 4719873 ATAGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTT--AATATACGTATCAATTAATA 4719930 Query 14493 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAG 14552 |||||||||||||| || | ||||||||||| || ||||| ||||| || || | | Sbjct 4719931 TACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTG 4719990 Query 14553 CTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14612 | |||| ||| || ||| | || | ||| | ||||||||||| || ||||||| Sbjct 4719991 CCTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCAT 4720050 Query 14613 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT 14672 || || || || || || || | || | ||| || | | | || | || |||| Sbjct 4720051 CAGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGAC 4720110 Query 14673 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | |||||| | | ||| ||||||||||||||||| ||||||||||| || Sbjct 4720111 GTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAA 4720162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482127350674640