Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4 107 1e-18 seq15 100 2e-16 seq138 98.7 8e-16 >seq4 Length=3596895 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| |||||| |||||||| ||||||||||||||||| | || || | || || Sbjct 3261276 TACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTC 3261217 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||| || || || |||| | | ||||||||| ||| | |||||||||||| Sbjct 3261216 CAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTATCCTG 3261157 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | || ||||| | | | | ||||| || || ||| | ||||||| ||| Sbjct 3261156 GATCT-TGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTT 3261098 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||| | || || || ||||||||||| Sbjct 3261097 TGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| ||||| || ||||| || || |||| || ||| | ||| ||||| Sbjct 3259600 ATGTAAAGTG--GATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCCAAC 3259543 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239 |||||||| || | || | | ||||||||| ||| | ||||||||||| |||| Sbjct 3259542 TGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATT 3259483 Query 18240 TGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCC 18298 | | || ||||| | ||| ||| || ||||| || | |||||| |||| || Sbjct 3259482 T-TAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCC 3259424 Query 18299 GGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || ||||| ||||| Sbjct 3259423 CGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| |||| |||||||| || || || || |||||||| |||| | Sbjct 3259395 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 3259336 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||| ||| || || ||| |||| | | ||||||||| ||| Sbjct 3259335 AAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 3259276 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | | |||| | | | | ||| ||| || || || Sbjct 3259275 ATTCCTTCTTTGTCTTGAATCT-TAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 3259217 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || | |||||| | ||||| ||||| || || || || ||||||||||| Sbjct 3259216 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 3259166 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| |||||| || || ||||| || ||||| || |||| || || || ||||| Sbjct 3261048 TACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTCTTC 3260989 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||| || || || || |||| || | ||||||||| || | |||||||||||| Sbjct 3260988 CAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTG 3260929 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | ||| || | ||| || || |||||| ||| | ||||||| |||| Sbjct 3260928 GATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTT 3260869 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || | || || || || |||||||| Sbjct 3260868 GCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| || ||||| ||||| || || || |||||||||| | Sbjct 3261521 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 3261462 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | ||| || || || |||| || | ||||||||| || Sbjct 3261461 AAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3261402 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| ||| | ||| || | ||| ||||| ||||| | Sbjct 3261401 ATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACT 3261342 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || |||||||||| | ||| || || ||||||||||| Sbjct 3261341 TCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 >seq15 Length=2140121 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| |||||||| || ||||||||||||||||||| || || || |||| Sbjct 600233 AGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCT 600292 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || |||||||| || || |||| | | ||||| || ||| | || || || || Sbjct 600293 TCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCT 600352 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | | | | |||||| |||||| || | ||||||| | Sbjct 600353 TGGATTT-TAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGT 600411 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || || ||||| || ||||| |||||| Sbjct 600412 CTTACCAGTTAAGGTTTTGACGAAAATCTGCATT 600445 >seq138 Length=433312 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| ||||| || ||||| |||| ||| || ||| ||||| ||||| || Sbjct 21725 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCCAACTGTTTTCCG 21666 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || || | |||||||| || | ||||||||||| ||||| ||| Sbjct 21665 GCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGAATTTTGGCCTTA 21606 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || ||| ||| ||| || || || |||| |||||| | ||||| || | ||| Sbjct 21605 ACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTT 21546 Query 18309 TTTACAAAAATTTGCATTTTTAAAC--TCTTATAAA 18342 ||||| |||||||||||| | ||| ||||| ||| Sbjct 21545 TTTACGAAAATTTGCATTGCTGAACAATCTTACAAA 21510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379176647415510