Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 3e-13 >seq1 Length=5074932 Score = 91.5 bits (100), Expect = 3e-13 Identities = 209/314 (67%), Gaps = 3/314 (1%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| ||||| || |||||||| || ||||| ||||| || || || || || ||| Sbjct 4719786 TTGCATTTGCCGCTGTTGAAGGCATTTTCTTCAGTGGCAGTTTTGCTTCGATCTTTTGGC 4719727 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | ||||||| | || | || ||||| | || || | || | Sbjct 4719726 TTAAGAAACGCGGTTTAATGCCTGGCTTGACATTTTCTAATGAACTAATCTCACGAGATG 4719667 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCAT 102098 | ||||| ||| | ||||| ||||| | |||| || | ||| | | | ||| Sbjct 4719666 AGGGTCTACATTGTGACTTCGCATGTTTAATGTTCCAACA---TTTGATACAAAAACCAA 4719610 Query 102099 CAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCA 102158 | ||| | ||| ||||||| | | ||||| || |||||| |||||||| | | Sbjct 4719609 GTAATGAACGAATTGTTGAAATAATTTCAGAAGCTGTTACAATTGAGCAAGAATTCTTAA 4719550 Query 102159 CAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTG 102218 | | | |||| ||||| ||| | || ||||| || || | ||| | || || | Sbjct 4719549 CTGACGCTTTGCCGGTTAATTTAATCGGTATGAATTGTAAACTAATGTCTGATTATATCG 4719490 Query 102219 AATTTGTGGCAGAT 102232 |||||||||| ||| Sbjct 4719489 AATTTGTGGCTGAT 4719476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989125043929090