Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11 479 4e-130 seq1 284 2e-71 >seq11 Length=2963766 Score = 479 bits (530), Expect = 4e-130 Identities = 1258/1890 (67%), Gaps = 50/1890 (3%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| || ||||| || | | | ||||||||||| || | || ||||| || Sbjct 1983220 TTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCA 1983161 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| |||| |||||||| || ||| || |||||| ||| | || Sbjct 1983160 GTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGT 1983101 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | || || || | || ||||||||||||||||| || || | ||||||||| Sbjct 1983100 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCC 1983041 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 ||||| || || || | ||| ||||||| |||||| || || |||| || ||| Sbjct 1983040 ATTTTGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTA-TATG 1982982 Query 62276 TTCTGGAA-GGTTTGTAT--TCTGAATGGATCCACCATCTACC-ATAATCCTATTCTTGA 62331 | ||| | || || || | || || || || | | ||| ||||| |||| || | Sbjct 1982981 CTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGA-CTAGTTATAATATTATTTTTCA 1982923 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGGTTAACTACT 62390 | ||||||| ||| || ||| |||| | | | ||| || || | || || ||| Sbjct 1982922 TATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAG-TGATGATTTACAACT 1982864 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 || ||||| || || | || | || || || ||||| || || ||||| | ||| Sbjct 1982863 TGAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGAC 1982804 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 ||||| || |||| |||||| || ||||| ||||| ||||| || || | || ||| Sbjct 1982803 TCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAG 1982744 Query 62511 TTTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCG 62568 || | || || ||||| | ||||| || || | | ||||||||||||||| Sbjct 1982743 TTACGAACGCC--ATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAC 1982686 Query 62569 ACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62628 ||| | ||| ||||||||||| ||||| || || ||||||| Sbjct 1982685 TTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACAT 1982626 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688 |||| ||||| | || | || || |||| || ||||| | || | ||||| || | Sbjct 1982625 ATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAGT 1982566 Query 62689 AAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 62748 |||| ||||| || || | | ||||| |||||| || || |||||||| Sbjct 1982565 AAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATAAC 1982506 Query 62749 TTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 62808 | | ||| || ||||| || || ||||| || ||||||||||| || | |||||| Sbjct 1982505 GCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCTGA 1982446 Query 62809 TATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 62868 ||| || | | || || || || ||||||| |||||| ||||| |||||||| | || Sbjct 1982445 AATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAAAT 1982386 Query 62869 TTC-TGACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCAT 62922 | | || | ||| ||||| || || || ||| ||| | | | | Sbjct 1982385 TACGTGTAACGGTCTTGGTGACC---TCTTTGAGGCGCTTAAAGTCATACGTTTTCTCGG 1982329 Query 62923 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 | | ||||||||||||||||| | || || | |||||||| |||||||||| | Sbjct 1982328 GTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGGTG 1982269 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 ||| ||||| | || || || || | |||||||||||| || || || | ||| || | Sbjct 1982268 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGCT 1982209 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 ||||||||||| ||||| ||||| ||||| | ||| | || || ||||| || | | Sbjct 1982208 GATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTACTT 1982149 Query 63103 GAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTA--TTATAGATTTGTATCTCC 63159 | ||||| ||||| || ||| | ||| | | || |||| || | ||| | | ||| Sbjct 1982148 GCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACCTTCT-TATTAGCACGTCC 1982091 Query 63160 TTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 || || ||| ||| ||||||| ||| ||||| || ||||| || | | || | Sbjct 1982090 TTCCT-GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAAAC 1982032 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT--CCTTC-ACTCGTTTCA 63276 |||||||| | || ||||| | |||||| ||| |||| |||| || ||| ||| Sbjct 1982031 CAGGACATTTGTGTGGGCACATTAGCGACCAGTCT---TCATTGGCTTCGACACGTCTCA 1981975 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 |||| |||||||| ||||| ||||| || | |||||| | | || || || || | Sbjct 1981974 TAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTTAC 1981915 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | || || || || | ||| | || | | ||||||| |||||| ||||||| ||| | Sbjct 1981914 CGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTAGA 1981855 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 |||| | | || |||||||| || || ||||| | || | || ||||| Sbjct 1981854 TGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATTGA 1981795 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGC 63513 | |||| || |||||| | | ||| || || | ||||| || || | || | || Sbjct 1981794 ACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCAATCGCAGTGC 1981735 Query 63514 CTCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569 || | || || || || ||| ||| |||||| || || || || ||| || Sbjct 1981734 CT---TTCGCGCGTATGCAATGTAC--ATT--TAGACCAATACCACCAGCAGATTTTGAA 1981682 Query 63570 ATTAATGCGCATCG-TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 || || || ||| | | | | ||| | | || || || ||| ||| || | |||| | Sbjct 1981681 ATCAAAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGAATCGTCCACCATGGT 1981623 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 ||||| || || |||| ||| | | | || | ||| || | || || || Sbjct 1981622 AAGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGA 1981563 Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 ||| || ||||| | || ||||| | ||||| || ||||| |||| || ||||| Sbjct 1981562 AGCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATC 1981503 Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 ||| || || | || || ||||||||||| ||||| |||| ||||||||||| Sbjct 1981502 TTCACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTTT 1981443 Query 63809 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63868 | || | || | ||| ||||| ||| | ||||||||||||||||| ||||| Sbjct 1981442 GCCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTGTAACC 1981383 Query 63869 AAAGTCTCGTTCGTAAATAATAACCGAATT 63898 ||| || || || || || ||| | || || Sbjct 1981382 AAAATCGCGGTCATATATGATAGCAGAGTT 1981353 >seq1 Length=5074932 Score = 284 bits (314), Expect = 2e-71 Identities = 501/725 (69%), Gaps = 9/725 (1%) Strand=Plus/Plus Query 33395 TCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACA 33454 ||||| ||| || ||| | ||| || || ||||| ||||| ||| | || ||| Sbjct 4719455 TCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACA 4719514 Query 33455 ATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 |||||| || || | ||||| || | ||| |||| | |||||||| ||||| | || Sbjct 4719515 ATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAAC 4719574 Query 33515 CGCATTTGTTATAATAAATCTAACGGTTTCTTCA---CTCGGTGGATGTAATAAATGTTT 33571 || | || || || || ||| || |||| || ||| |||| ||||||| Sbjct 4719575 AGCTTCTGAAATTATT--TC-AACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTG 4719631 Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 ||||| ||||||||||| || || || |||||||| |||| |||| ||| ||||| Sbjct 4719632 GAACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGA 4719691 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 ||| || | || ||||||| || || || ||||||||||| || ||||| || || Sbjct 4719692 AAATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCC 4719751 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-- 33749 ||||| || ||||| || || ||||| ||||| | | || ||| | ||| Sbjct 4719752 ACTGAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGA 4719811 Query 33750 CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || | | | |||| | |||||||| ||||| ||||| |||||| || || Sbjct 4719812 CTTAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTC 4719871 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || || || || | || ||| ||| || ||| |||| ||| ||||| || || | Sbjct 4719872 AATAGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATAT 4719931 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 |||||||||||| ||||| | ||||| || || || |||||||| ||||| || | || Sbjct 4719932 ACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGC 4719991 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 ||| |||| ||||||||| | || ||||| |||||||||||||||| || ||||| Sbjct 4719992 CTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATC 4720051 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 | || || || || || || || ||| || |||| | ||| | || || Sbjct 4720052 AGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACG 4720111 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 |||||||| ||||||||||| | ||| ||||| || |||||||| || ||||| || Sbjct 4720112 TGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTC 4720171 Query 34109 TGCCT 34113 ||||| Sbjct 4720172 TGCCT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629532623281440