Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11 419 2e-112 seq1 300 1e-76 >seq11 Length=2963766 Score = 419 bits (464), Expect = 2e-112 Identities = 1221/1852 (66%), Gaps = 56/1852 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||||| || | ||| || | || |||||||| |||||| Sbjct 1983217 TCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCAGTT 1983158 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || |||| |||||||| || ||| || ||||| | || | || | | Sbjct 1983157 TTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGTTCA 1983098 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | ||| | | || ||||||||||| || || || || | || || |||||| Sbjct 1983097 GCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCCATT 1983038 Query 36970 TCTAAAATACATTTT-TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 | | | | |||| ||| ||||||||||| ||||| |||| | ||||| | Sbjct 1983037 T-TGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTATATGCTG 1982979 Query 37029 TGGTA---AATCTAAATGTTGAATAGAACC---ATTATGTAACACAATTGTATTCTTTAT 37082 ||||| | || | | ||| || || || | || || | ||| |||| || || Sbjct 1982978 TGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTA-GT--TATAATATTATTTTTCAT 1982922 Query 37083 GTCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 |||| || ||||| | | ||| | |||| || | || | ||| |||||||||| | Sbjct 1982921 ATCATCATCCCACA-AACCCAACTCAGTTAGATCGCGTAACAAGTGATGATTTACAACTT 1982863 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 |||| || || || | || | | |||||| |||||| ||| |||||||||| |||| Sbjct 1982862 GAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGACT 1982803 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||| || | | ||||| | ||| || ||||| ||||| || || | || | | Sbjct 1982802 CATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGT 1982743 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | | | |||||| |||||| ||| || | ||| |||||| ||| | ||| ||| Sbjct 1982742 TACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCACTTG 1982683 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | |||| |||||| ||||| ||||||||||| ||||| | || ||| | ||||| Sbjct 1982682 GTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACATATG 1982623 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | ||||||| || || ||| |||| ||||||||| ||||| || || |||| || | Sbjct 1982622 TTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAGTAAA 1982563 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | |||||||| |||||| |||||| |||||| || || ||| ||| ||| | || Sbjct 1982562 TAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATAACGCA 1982503 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 ||| || || | || || ||||| || || || ||||| ||||| | |||| | || Sbjct 1982502 TTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCTGAAAT 1982443 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT-- 37619 | ||| | | || | |||||||| ||| || ||||| |||||||| | ||| Sbjct 1982442 TCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAAATTAC 1982383 Query 37620 -TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAA----ATACGTTATTA 37674 | |||| | || || | ||| ||| | | ||| ||||||| || Sbjct 1982382 GTGTAAC---GGTCTTGGTGA----CCTC--TTTGAGGCGCTTAAAGTCATACGTT-TTC 1982333 Query 37675 T------TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728 | | ||||| | |||| | || || ||| ||||| ||||| || ||||| Sbjct 1982332 TCGGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATC- 1982274 Query 37729 TCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATT 37787 || | || ||| | ||| || ||||| | |||||| | ||||||| || | ||| Sbjct 1982273 GGGTGCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATT 1982214 Query 37788 GCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTC 37847 ||||| ||| |||||||| ||||||||||| || ||||| || || || Sbjct 1982213 CTGCTGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTC 1982154 Query 37848 TATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--Att 37905 || ||| | || ||||| | ||| | |||| |||||| || || ||| | Sbjct 1982153 TACTTGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTTACCTTCTTATTAGCACG 1982094 Query 37906 tttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT 37965 | ||| | ||| |||| | ||| ||||| | ||| || | ||||| || || | Sbjct 1982093 TCCTTCCT--GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGT 1982036 Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || || ||||||| | ||| |||||||| ||||| ||||||| ||| || ||| | Sbjct 1982035 AAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTTCGACACGTCTC 1981976 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTT 38084 ||||||| |||||||| ||| | || ||| || |||||| ||| | | ||||| || Sbjct 1981975 ATAAATAGATCAGGTATCCACAGAGC-GTAGAACAAATCTCTGGCGCGGTGCTCTTCTTT 1981917 Query 38085 CCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATAT 38143 || || |||||| || | ||| |||||||||||||| ||||||||||| | | Sbjct 1981916 ACCGGTGTT-TTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGT 1981858 Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203 | || | | || ||||| | |||| | || || |||| | ||| | || |||| Sbjct 1981857 AGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTAT 1981798 Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263 | | | || | ||| || || | |||||| || |||| ||| | || | || || Sbjct 1981797 TGAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCAATCGCAG 1981738 Query 38264 TACCCTTAGCTCGTAT---AT-TACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT 38319 | || || || ||||| || ||| | | || || || ||||| ||| |||||| Sbjct 1981737 TGCCTTTCGCGCGTATGCAATGTACATTTAGA----CCAATACCACCAGCAGATTTTGAA 1981682 Query 38320 ATTAAAGCGCATTG-TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGG 38378 || ||||| ||||| | | | | | ||| ||||| || || || ||| || | Sbjct 1981681 ATCAAAGCACATTGATGTGCAGATGTGAAA-ATACCGTCAATGGAATCGTCCACCATGGT 1981623 Query 38379 TAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGA 38438 |||| || || |||| ||| ||| | || | || || | ||| || || Sbjct 1981622 AAGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGA 1981563 Query 38439 TGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATC 38498 |||||| | || | || || | | || |||||||| ||| | |||| ||||| Sbjct 1981562 AGCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATC 1981503 Query 38499 ACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT 38558 | || || ||||| | | || | ||||| |||||| ||||||| || | ||||| Sbjct 1981502 TTCACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTTT 1981443 Query 38559 ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 |||| || || | ||| || ||| | ||||| | ||||||||| Sbjct 1981442 GCCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAA 1981391 >seq1 Length=5074932 Score = 300 bits (332), Expect = 1e-76 Identities = 485/691 (70%), Gaps = 11/691 (2%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || || ||||| ||||| | |||||||| |||||||||||| || | || || Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC---AATGATTATCGA 11580 ||| | ||| | || || || || | || || |||| || || ||| ||| || | Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATT-TCAA 4719594 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640 | || ||| ||| |||| |||| ||||||| ||||||||||| || || || Sbjct 4719595 CA--ATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTC 4719652 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 |||||||| ||| || |||| |||||||||||||||||||| || || ||||| || Sbjct 4719653 ACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAA 4719712 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 || ||||| || | |||||| || | |||||| ||| ||||| || || || || Sbjct 4719713 ACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAAC 4719772 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTTGCTAGATATCCATTTTCT 11817 ||| |||||||| | ||| | ||| ||| | || || ||| ||||| Sbjct 4719773 AGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAGAAATCCAAGCAAG 4719832 Query 11818 GGCCCAATCAG-CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCA 11876 |||||||||| ||| | ||| |||| |||||| || |||||||| ||||| | Sbjct 4719833 TGCCCAATCAGCCTTACGCTTTACCGCA-GGCATTGTCTCAATAGCGTTGAATAAGTAAT 4719891 Query 11877 TTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936 || ||| | | ||| | | ||| ||||| ||||||| |||||||||||| ||||| | Sbjct 4719892 TTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAGAATGCA 4719951 Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996 |||||||||||| ||||||||||||||||| || |||||||||| | || || || Sbjct 4719952 CATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTT 4720011 Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 || | ||| ||||||| ||||| |||||||||||| | || || || |||| Sbjct 4720012 GGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTA 4720071 Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTT 12116 | ||| || || | | ||| | | ||| | |||||||||| | ||||| Sbjct 4720072 ACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTT 4720131 Query 12117 TTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 | || | ||||||||| ||||| ||||| || Sbjct 4720132 TAGAAAGATCTACTTCCTCAACTGTCCAGAA 4720162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468312804241120