Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq11 419 2e-112
seq1 300 1e-76
>seq11
Length=2963766
Score = 419 bits (464), Expect = 2e-112
Identities = 1221/1852 (66%), Gaps = 56/1852 (3%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || || |||| ||||| ||||| || | ||| || | || |||||||| ||||||
Sbjct 1983217 TCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCAGTT 1983158
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || || |||| |||||||| || ||| || ||||| | || | || | |
Sbjct 1983157 TTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGTTCA 1983098
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
| | | ||| | | || ||||||||||| || || || || | || || ||||||
Sbjct 1983097 GCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCCATT 1983038
Query 36970 TCTAAAATACATTTT-TGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028
| | | | |||| ||| ||||||||||| ||||| |||| | ||||| |
Sbjct 1983037 T-TGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTATATGCTG 1982979
Query 37029 TGGTA---AATCTAAATGTTGAATAGAACC---ATTATGTAACACAATTGTATTCTTTAT 37082
||||| | || | | ||| || || || | || || | ||| |||| || ||
Sbjct 1982978 TGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTA-GT--TATAATATTATTTTTCAT 1982922
Query 37083 GTCATTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141
|||| || ||||| | | ||| | |||| || | || | ||| |||||||||| |
Sbjct 1982921 ATCATCATCCCACA-AACCCAACTCAGTTAGATCGCGTAACAAGTGATGATTTACAACTT 1982863
Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201
|||| || || || | || | | |||||| |||||| ||| |||||||||| ||||
Sbjct 1982862 GAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGACT 1982803
Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261
|||| || | | ||||| | ||| || ||||| ||||| || || | || | |
Sbjct 1982802 CATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGT 1982743
Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321
| | | |||||| |||||| ||| || | ||| |||||| ||| | ||| |||
Sbjct 1982742 TACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCACTTG 1982683
Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381
| |||| |||||| ||||| ||||||||||| ||||| | || ||| | |||||
Sbjct 1982682 GTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACATATG 1982623
Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441
| ||||||| || || ||| |||| ||||||||| ||||| || || |||| || |
Sbjct 1982622 TTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAGTAAA 1982563
Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501
| |||||||| |||||| |||||| |||||| || || ||| ||| ||| | ||
Sbjct 1982562 TAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATAACGCA 1982503
Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561
||| || || | || || ||||| || || || ||||| ||||| | |||| | ||
Sbjct 1982502 TTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCTGAAAT 1982443
Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT-- 37619
| ||| | | || | |||||||| ||| || ||||| |||||||| | |||
Sbjct 1982442 TCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAAATTAC 1982383
Query 37620 -TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAA----ATACGTTATTA 37674
| |||| | || || | ||| ||| | | ||| ||||||| ||
Sbjct 1982382 GTGTAAC---GGTCTTGGTGA----CCTC--TTTGAGGCGCTTAAAGTCATACGTT-TTC 1982333
Query 37675 T------TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCT 37728
| | ||||| | |||| | || || ||| ||||| ||||| || |||||
Sbjct 1982332 TCGGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATC- 1982274
Query 37729 TCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATT 37787
|| | || ||| | ||| || ||||| | |||||| | ||||||| || | |||
Sbjct 1982273 GGGTGCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATT 1982214
Query 37788 GCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTC 37847
||||| ||| |||||||| ||||||||||| || ||||| || || ||
Sbjct 1982213 CTGCTGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTC 1982154
Query 37848 TATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--Att 37905
|| ||| | || ||||| | ||| | |||| |||||| || || ||| |
Sbjct 1982153 TACTTGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTTACCTTCTTATTAGCACG 1982094
Query 37906 tttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT 37965
| ||| | ||| |||| | ||| ||||| | ||| || | ||||| || || |
Sbjct 1982093 TCCTTCCT--GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGT 1982036
Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025
|| || ||||||| | ||| |||||||| ||||| ||||||| ||| || ||| |
Sbjct 1982035 AAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTTCGACACGTCTC 1981976
Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTT 38084
||||||| |||||||| ||| | || ||| || |||||| ||| | | ||||| ||
Sbjct 1981975 ATAAATAGATCAGGTATCCACAGAGC-GTAGAACAAATCTCTGGCGCGGTGCTCTTCTTT 1981917
Query 38085 CCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATAT 38143
|| || |||||| || | ||| |||||||||||||| ||||||||||| | |
Sbjct 1981916 ACCGGTGTT-TTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGT 1981858
Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203
| || | | || ||||| | |||| | || || |||| | ||| | || ||||
Sbjct 1981857 AGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTAT 1981798
Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263
| | | || | ||| || || | |||||| || |||| ||| | || | || ||
Sbjct 1981797 TGAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCAATCGCAG 1981738
Query 38264 TACCCTTAGCTCGTAT---AT-TACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT 38319
| || || || ||||| || ||| | | || || || ||||| ||| ||||||
Sbjct 1981737 TGCCTTTCGCGCGTATGCAATGTACATTTAGA----CCAATACCACCAGCAGATTTTGAA 1981682
Query 38320 ATTAAAGCGCATTG-TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGG 38378
|| ||||| ||||| | | | | | ||| ||||| || || || ||| || |
Sbjct 1981681 ATCAAAGCACATTGATGTGCAGATGTGAAA-ATACCGTCAATGGAATCGTCCACCATGGT 1981623
Query 38379 TAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGA 38438
|||| || || |||| ||| ||| | || | || || | ||| || ||
Sbjct 1981622 AAGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGA 1981563
Query 38439 TGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATC 38498
|||||| | || | || || | | || |||||||| ||| | |||| |||||
Sbjct 1981562 AGCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATC 1981503
Query 38499 ACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT 38558
| || || ||||| | | || | ||||| |||||| ||||||| || | |||||
Sbjct 1981502 TTCACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTTT 1981443
Query 38559 ATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610
|||| || || | ||| || ||| | ||||| | |||||||||
Sbjct 1981442 GCCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAA 1981391
>seq1
Length=5074932
Score = 300 bits (332), Expect = 1e-76
Identities = 485/691 (70%), Gaps = 11/691 (2%)
Strand=Plus/Plus
Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523
||| || || ||||| ||||| | |||||||| |||||||||||| || | || ||
Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535
Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC---AATGATTATCGA 11580
||| | ||| | || || || || | || || |||| || || ||| ||| || |
Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATT-TCAA 4719594
Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640
| || ||| ||| |||| |||| ||||||| ||||||||||| || || ||
Sbjct 4719595 CA--ATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTC 4719652
Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700
|||||||| ||| || |||| |||||||||||||||||||| || || ||||| ||
Sbjct 4719653 ACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAA 4719712
Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760
|| ||||| || | |||||| || | |||||| ||| ||||| || || || ||
Sbjct 4719713 ACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAAC 4719772
Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTTGCTAGATATCCATTTTCT 11817
||| |||||||| | ||| | ||| ||| | || || ||| |||||
Sbjct 4719773 AGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAGAAATCCAAGCAAG 4719832
Query 11818 GGCCCAATCAG-CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCA 11876
|||||||||| ||| | ||| |||| |||||| || |||||||| ||||| |
Sbjct 4719833 TGCCCAATCAGCCTTACGCTTTACCGCA-GGCATTGTCTCAATAGCGTTGAATAAGTAAT 4719891
Query 11877 TTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936
|| ||| | | ||| | | ||| ||||| ||||||| |||||||||||| ||||| |
Sbjct 4719892 TTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAGAATGCA 4719951
Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996
|||||||||||| ||||||||||||||||| || |||||||||| | || || ||
Sbjct 4719952 CATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTT 4720011
Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056
|| | ||| ||||||| ||||| |||||||||||| | || || || ||||
Sbjct 4720012 GGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTA 4720071
Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTT 12116
| ||| || || | | ||| | | ||| | |||||||||| | |||||
Sbjct 4720072 ACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTT 4720131
Query 12117 TTGATAAATCTACTTCTTCAACGGTCCAAAA 12147
| || | ||||||||| ||||| ||||| ||
Sbjct 4720132 TAGAAAGATCTACTTCCTCAACTGTCCAGAA 4720162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468312804241120
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