Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11 486 3e-132 seq1 318 8e-82 >seq11 Length=2963766 Score = 486 bits (538), Expect = 3e-132 Identities = 1260/1891 (67%), Gaps = 52/1891 (3%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| || ||||| || | | | ||||||||||| || | || ||||| || Sbjct 1983220 TTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCA 1983161 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| ||||| |||| |||||||| || ||| || |||||| ||| | || Sbjct 1983160 GTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGT 1983101 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | || || || | || ||||||||||||||||| || || | ||||||||| Sbjct 1983100 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCC 1983041 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068 ||||| || || || | ||| ||||||| |||||| || || |||| || ||| Sbjct 1983040 ATTTTGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTA-TATG 1982982 Query 65069 TTCTGGAA-GGTTTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 | ||| | || || || | || || || || | | | ||||| |||| || || Sbjct 1982981 CTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTTTCAT 1982922 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 65184 ||||||| ||| || ||| |||| | | | ||| || || |||| || |||| Sbjct 1982921 ATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAG-TGATGATTTACAACTT 1982863 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 ||||||| || || | || | || || || ||||| || || ||||| | |||| Sbjct 1982862 GAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGACT 1982803 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 |||| || |||| |||||| || ||||| ||||| ||||| || || | || ||| | Sbjct 1982802 CATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGT 1982743 Query 65305 TTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGA--GGTTCCCAATTCCAAAGATCC 65360 | | || || ||||| | ||||| || || | ||| ||||||||||||||| Sbjct 1982742 TACGAACGCC--ATGTTGCTTAATTTTCTCCTTCAATTCGGT--CCAATTCCAAAGATCA 1982687 Query 65361 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 65420 ||| ||||||||||| ||||| || || |||||| Sbjct 1982686 CTTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACA 1982627 Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| || || | || | || || |||| ||| ||||| | || | ||||| || Sbjct 1982626 TATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAG 1982567 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 ||||| |||||||| || | | ||||| |||||| || || |||||||| Sbjct 1982566 TAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATAA 1982507 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | ||| || ||||| || || ||||| || ||||||||||| || | |||||| Sbjct 1982506 CGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCTG 1982447 Query 65601 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 65660 ||| || | | || || || || ||||||| |||||| ||||| |||||||| | | Sbjct 1982446 AAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAAA 1982387 Query 65661 TTTC-TGACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCA 65714 || | || | ||| ||||| || || || ||| ||| | | ||| Sbjct 1982386 TTACGTGTAACGGTCTTGGTGACC---TCTTTGAGGCGCTTAAAGTCATACGTTTTCTCG 1982330 Query 65715 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 65774 | | ||||||||||||||||| | || || | ||||| || |||||||||| | Sbjct 1982329 GGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGGT 1982270 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 ||| ||||| | || || || || | |||||||||||| || || || | ||| || Sbjct 1982269 GCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGC 1982210 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 |||||||||||| ||||| ||||| ||||| | ||| | || || ||||| || | Sbjct 1982209 TGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTACT 1982150 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTA--TTATAGATTTGTATCTC 65951 || ||||| ||||| || ||| | ||| | | || |||| || | ||| | | || Sbjct 1982149 TGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACCTTCT-TATTAGCACGTC 1982092 Query 65952 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 66011 || || ||| ||| ||||||| ||| ||||| || ||||| || | | || Sbjct 1982091 CTTCCT-GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAAA 1982033 Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT--CCTTC-ACTCGTTTC 66068 |||||||||| | || ||||| | |||||| ||| |||| |||| || ||| || Sbjct 1982032 CCAGGACATTTGTGTGGGCACATTAGCGACCAGTCT---TCATTGGCTTCGACACGTCTC 1981976 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 ||||| |||||||| ||||| ||||| || |||||||||| | || || || || Sbjct 1981975 ATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTTA 1981916 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || || || || || | ||| | || | | |||||| |||||| ||||||| ||| Sbjct 1981915 CCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTAG 1981856 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 ||||| | | || |||||||| || || ||||| | || | || ||||| Sbjct 1981855 ATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATTG 1981796 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGC- 66306 | |||| || |||||| | | |||||| || || ||||| || |||| | || || Sbjct 1981795 AACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCA---ATCGCA 1981739 Query 66307 -TTCCACTTGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 66361 | || | || || || || ||| ||| |||||| || || || || ||| || Sbjct 1981738 GTGCCTTTCGCGCGTATGCAATGTAC--ATT--TAGACCAATACCACCAGCAGATTTTGA 1981683 Query 66362 GATTAATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 66420 || || || ||| | | | | | | | | || || || || ||| |||| |||| Sbjct 1981682 AATCAAAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGAATCGTCCACCATGG 1981624 Query 66421 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 66480 |||||| || || |||| ||| | | | || | ||| || | || || | Sbjct 1981623 TAAGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCG 1981564 Query 66481 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 66540 |||| || ||||| | || ||||| | ||||| || ||||| |||| || |||| Sbjct 1981563 AAGCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATAT 1981504 Query 66541 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 66600 | ||| || || | || || ||||||||||| ||||| |||| ||||| || | Sbjct 1981503 CTTCACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTT 1981444 Query 66601 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 66660 || || | || | ||| ||||| ||| | ||||||||||||||||| ||||| Sbjct 1981443 TGCCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTGTAAC 1981384 Query 66661 AAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 ||| || || || || || ||| | ||||| Sbjct 1981383 CAAAATCGCGGTCATATATGATAGCAGAGTT 1981353 >seq1 Length=5074932 Score = 318 bits (352), Expect = 8e-82 Identities = 505/722 (70%), Gaps = 3/722 (0%) Strand=Plus/Plus Query 35971 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 36030 ||||| ||| || ||| | ||| || |||||||| ||||| ||| | || ||| Sbjct 4719455 TCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACA 4719514 Query 36031 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 |||||| || || | ||||| || | ||| |||| | |||||||| ||||| | || Sbjct 4719515 ATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAAC 4719574 Query 36091 CGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 36150 || |||| || || | | | ||| | ||| ||| | | ||||||| || Sbjct 4719575 AGCTTCTGAAATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAA 4719634 Query 36151 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 36210 ||| ||||||||||| || || ||||||||||| |||| |||| ||| || ||||| Sbjct 4719635 CATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAA 4719694 Query 36211 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 36270 || | || ||||||| || || || ||||||||||| || || ||||| ||| Sbjct 4719695 TGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACT 4719754 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTG 36328 |||||||| ||||| || || ||||| ||||| | | || ||| | ||| ||| Sbjct 4719755 GAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTT 4719814 Query 36329 TCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 36387 | | | |||| | |||||||| ||||| ||||| |||||||||||| || Sbjct 4719815 AGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAAT 4719874 Query 36388 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 36447 ||| || || | || ||| ||| || ||| |||| ||| |||||||| || | ||| Sbjct 4719875 AGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACT 4719934 Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 ||||||||| ||||| | ||||| || || ||||||||||| ||||| || | ||||| Sbjct 4719935 ATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTC 4719994 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 |||| || |||||| | || ||||| |||||||||||||||| || || ||| Sbjct 4719995 TGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGA 4720054 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATT 36627 || || || || || || || ||| || |||| | ||| || || || Sbjct 4720055 TGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGC 4720114 Query 36628 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 |||||||| ||||||||||| | ||| ||||| || |||||||| || ||||| ||||| Sbjct 4720115 CCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGC 4720174 Query 36688 CT 36689 || Sbjct 4720175 CT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657874993262320