Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 533 2e-146 seq1 311 1e-79 >seq11 Length=2963766 Score = 533 bits (590), Expect = 2e-146 Identities = 1270/1889 (67%), Gaps = 48/1889 (3%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| || ||||| || | | | ||||||||||| || | || ||||| || Sbjct 1983220 TTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCA 1983161 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| |||| ||||| || || ||| || |||||| ||| | || Sbjct 1983160 GTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGT 1983101 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | || || || | || ||||||||||||||||| || || | ||||||||| Sbjct 1983100 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCC 1983041 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 ||||| || || || | ||| ||||||| |||||| || || |||| | |||| Sbjct 1983040 ATTTTGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGT-ATATG 1982982 Query 78948 TTCTGG-AAGGTTT--GTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 | ||| | || || | || || || || || | | | ||||| |||| || || Sbjct 1982981 CTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTTTCAT 1982922 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 79063 || |||| ||| || ||| |||| | | | ||| || || |||| || |||| Sbjct 1982921 ATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAG-TGATGATTTACAACTT 1982863 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 ||||||| || || | || | || || || ||||| || |||||||| | || | Sbjct 1982862 GAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGACT 1982803 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 |||| || |||| |||||| || ||||| || |||||||| || || | || ||| | Sbjct 1982802 CATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGT 1982743 Query 79184 TTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTC---CCAATCCCAAAGATCAG 79240 | | || || | | | ||||| || || | |||| ||||| |||||||||| Sbjct 1982742 TACGAACGCCATGTTGCTTAATTTTCTCCTTCA---ATTCGGTCCAATTCCAAAGATCAC 1982686 Query 79241 ACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGT 79300 || || ||| | ||||| ||||||||||| |||||| || ||| ||| | Sbjct 1982685 TTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACAT 1982626 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 |||||||||||| || | |||||||||||||| ||||| | || | || || || | Sbjct 1982625 ATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAGT 1982566 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 |||| |||||||| || | | ||| | |||||| || || |||||||| Sbjct 1982565 AAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATAAC 1982506 Query 79421 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCT 79480 | | ||| || ||||| || || ||||| || ||||||||||| || | |||||| Sbjct 1982505 GCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCTGA 1982446 Query 79481 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 79540 ||| || | | || || || || ||||||| |||||| ||||| |||||||| | || Sbjct 1982445 AATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAAAT 1982386 Query 79541 TCC---TGACTATTACTT--TGACCACATCCTTTAGTTTGAGAAAATCAAA--TCGTC-C 79592 | | | || | ||| ||||| || || || ||| ||| | | || | Sbjct 1982385 TACGTGTAACGGT--CTTGGTGACC---TCTTTGAGGCGCTTAAAGTCATACGTTTTCTC 1982331 Query 79593 ATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGC 79652 | | |||||||||||||| |||| || || | ||||| || |||||||||| | Sbjct 1982330 GGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGG 1982271 Query 79653 ATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTG 79712 ||| ||||| | ||||| || || | |||||||||||||| || || | ||| || Sbjct 1982270 TGCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTG 1982211 Query 79713 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAAT 79772 |||||||||||| ||||| ||||| ||||| | ||| |||| || ||||| || | Sbjct 1982210 CTGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTAC 1982151 Query 79773 CTGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTA--TTATAGACTTGTATCT 79829 || ||||| ||||| || ||| | ||| | | || |||| || | | | | | | Sbjct 1982150 TTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACCTTCT-TATTAGCACGT 1982093 Query 79830 CTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAA 79889 | || || ||| |||| ||| ||| ||| ||||| || ||||| || || | ||| Sbjct 1982092 CCTTCCT-GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAA 1982034 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 |||||||||| || || ||||| | |||||| ||| ||| | | || ||| |||| Sbjct 1982033 ACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTTCGACACGTCTCAT 1981974 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 ||| |||||||| ||||| ||||| || | |||||||| | ||||| || || || Sbjct 1981973 AAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTTACC 1981914 Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069 || || || || | ||| | || | | ||||||| |||||| ||||||| ||| || Sbjct 1981913 GGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTAGAT 1981854 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 ||| | | || || ||||| || || ||||| | || | || ||||| | Sbjct 1981853 GGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATTGAA 1981794 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGC--T 80186 |||| || |||||| | | |||||| || || ||||| || |||| | || || | Sbjct 1981793 CACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCA---ATCGCAGT 1981737 Query 80187 TCCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 || | || || || || ||| ||| |||||| || || || || ||| || | Sbjct 1981736 GCCTTTCGCGCGTATGCAATGTAC--ATT--TAGACCAATACCACCAGCAGATTTTGAAA 1981681 Query 80243 TTAATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA 80301 | || || ||| | | | | | | | | || || || ||| ||| || | |||| || Sbjct 1981680 TCAAAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGAATCGTCCACCATGGTA 1981622 Query 80302 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 80361 |||| || || |||| ||| | | | || | ||| || | || || ||| Sbjct 1981621 AGTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGAA 1981562 Query 80362 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 80421 || || ||||| | || || || | ||||| || ||||| |||| || ||||| Sbjct 1981561 GCATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATCT 1981502 Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 ||| || || | || || ||||||||||| ||||| |||| ||||| || ||| Sbjct 1981501 TCACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTTTG 1981442 Query 80482 TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 80541 ||| | || | ||| || || ||| | ||||||||||||||||| ||||| | Sbjct 1981441 CCATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTGTAACCA 1981382 Query 80542 AAGTCTCGTTCGTAAATAATAACCGAGTT 80570 || || || || || || ||| | ||||| Sbjct 1981381 AAATCGCGGTCATATATGATAGCAGAGTT 1981353 >seq1 Length=5074932 Score = 311 bits (344), Expect = 1e-79 Identities = 507/725 (70%), Gaps = 9/725 (1%) Strand=Plus/Plus Query 49773 TCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACA 49832 ||||| ||| || ||| | ||| || |||||||| ||||| ||| | || ||| Sbjct 4719455 TCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACA 4719514 Query 49833 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 49892 |||||| || || | ||||| || | ||| |||| | |||||||| ||||| | || Sbjct 4719515 ATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAAC 4719574 Query 49893 CGCATCTGTTATAATAGATCTAACGGTTTCTTCA---CTCGGTGGATGCAATAAATGTTT 49949 || |||| || || || ||| || |||| || ||| || | ||||||| Sbjct 4719575 AGCTTCTGAAATTATT--TC-AACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTG 4719631 Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 ||||| ||||||||||| || || || |||||||| |||| |||||||| || || Sbjct 4719632 GAACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGA 4719691 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 ||| || | || ||||||| || || || ||||||||||| || || ||||| || Sbjct 4719692 AAATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCC 4719751 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG-- 50127 | ||||| || ||||| || |||||||| |||| | | || ||| | |||| Sbjct 4719752 ACTGAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGA 4719811 Query 50128 CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 || | | | |||| | |||||||| ||||| ||||| |||||| || || Sbjct 4719812 CTTAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTC 4719871 Query 50187 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 50246 || || || || | || ||| ||| || ||| |||| ||| ||||| || || | Sbjct 4719872 AATAGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATAT 4719931 Query 50247 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 50306 |||||||||||| ||||| | ||||| || || || |||||||| ||||| || | || Sbjct 4719932 ACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGC 4719991 Query 50307 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366 ||| |||| ||||||||| | || |||||| |||||||||||||||| || || || Sbjct 4719992 CTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATC 4720051 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT 50426 | || || || || || || || ||| || |||||| ||| || || || Sbjct 4720052 AGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACG 4720111 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 |||||||| ||||||||||| | ||||||||| || |||||||| || ||||| || Sbjct 4720112 TGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTC 4720171 Query 50487 TGCCT 50491 ||||| Sbjct 4720172 TGCCT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717943801324720