Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 246 3e-60 >seq1 Length=5074932 Score = 246 bits (272), Expect = 3e-60 Identities = 486/714 (68%), Gaps = 14/714 (2%) Strand=Plus/Plus Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || ||||| | || || | |||||| | ||| || ||||| | |||||||| | |||| Sbjct 4719456 CCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAA 4719515 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 |||||||| |||| || || || | | ||||| ||||||| || || | ||| Sbjct 4719516 TTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACA 4719575 Query 13806 GCCTCTTTTATAATAATTGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTA 13862 | ||| | ||| ||| || ||| |||||| || | | | | ||||| Sbjct 4719576 G---CTTCTGAAATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGG 4719632 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || |||||||| || || |||||||| || |||||||||| || ||||| || ||| Sbjct 4719633 AACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAA 4719692 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA--TGACC 13980 ||||| || || ||||| || || ||||| || | |||||| || | |||||| || | Sbjct 4719693 AATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCA 4719752 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 | | ||||| || || ||||| || ||||| || |||| ||||| ||||| || Sbjct 4719753 CTG--AAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCG 4719810 Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 || || ||||| ||||| |||| || || | | |||||| | Sbjct 4719811 ACTTAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCT 4719870 Query 14101 CAATAGCATTAAATAAATA--TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 ||||||| || ||||| || ||| || | | | | ||| ||| || |||||||| | Sbjct 4719871 CAATAGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTT--AATATACGTATCAATTAA 4719928 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 || |||||||||||||| || | ||||||||||| || ||||| ||||| ||||| | Sbjct 4719929 TATACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACG 4719988 Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 || || | ||| ||||| | || | ||| | ||||||||||| || ||||| Sbjct 4719989 TGCCTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACC 4720048 Query 14279 ATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338 |||| || || || || || || | || | ||| || | | | || | || |||| Sbjct 4720049 ATCAGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAG 4720108 Query 14339 TTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | |||||| | ||| ||||||||||||||||| ||||||||||| || Sbjct 4720109 ACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAA 4720162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479510935073200