Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1 224 9e-54 >seq1 Length=5074932 Score = 224 bits (248), Expect = 9e-54 Identities = 467/692 (67%), Gaps = 10/692 (1%) Strand=Plus/Plus Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 |||||| | ||| || ||||| | |||||||| | |||||||||||| |||| || || Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 || | | |||||| ||||||| || || | ||||| || | ||| || | Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTC---TGAAATTATTTC 4719592 Query 13614 AATAAT---GTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 || ||| |||||| || | | | | ||||| || |||||||| || || || Sbjct 4719593 AACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTC 4719652 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 |||||| || |||||||||| || ||||| || |||||||| || || ||||| || Sbjct 4719653 ACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAA 4719712 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || ||||| || | |||||| || | ||| || || ||||| || || ||||| Sbjct 4719713 ACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAAC 4719772 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 || ||||| || |||| ||||| ||||| || || || ||||| Sbjct 4719773 AGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAGAAATCCAAGCAAG 4719832 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA--ATGT 13908 ||||| |||| || || | | |||||| || || || |||||||| | | Sbjct 4719833 TGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAATAGCGTTGAATAAGTAATT 4719892 Query 13909 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 || || | | | | ||| ||| || |||||||| | || |||||||||||||| || Sbjct 4719893 TCTTTGTTTCGAATCCTT--AATATACGTATCAATTAATATACTATACATTTCAGAATGC 4719950 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028 | ||||| ||||| || ||||| ||||| || || | || |||| ||| || || Sbjct 4719951 ACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCT 4720010 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 | || | ||| | || |||||||| |||||||||||| || || || || || Sbjct 4720011 TGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAAGGCT 4720070 Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCC 14148 || | || | ||| || | | | || | || |||| | |||||| | | ||| Sbjct 4720071 AACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCT 4720130 Query 14149 TTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 ||||||||||||||||| ||||||||||| || Sbjct 4720131 TTAGAAAGATCTACTTCCTCAACTGTCCAGAA 4720162 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || |||||| | ||||| | ||| |||||||| | |||| | | || ||| ||| Sbjct 4719226 TAGAAATCAGCGTCTAACGTAAACACATTATCCATTCGATTAGCAGTTACTCCCCATTTC 4719285 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 || ||||||| |||| | |||||||||||||| ||||| || || | ||| ||| |||| Sbjct 4719286 TGGTATTCACCAACTTTCTTTTCAAAAAAGTTTGTTTTCCCGTCTAATGAAATAAGTTCC 4719345 Query 13432 ATAAAATCGAATGGATT 13448 || ||| ||| || || Sbjct 4719346 ATGAAACTGAAAGGGTT 4719362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478372250532720