Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 >seq4 Length=3596895 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| | || ||||| || | ||| |||||||| | ||||| || ||| Sbjct 3261293 CCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 3261234 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||||||| || ||||| || ||||| || |||||||| | || Sbjct 3261233 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 3261174 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| ||||||| | | | |||||| | || || Sbjct 3261173 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACT 3261114 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || || ||||| ||||||||||| Sbjct 3261113 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 ||||||| || || | || ||||||||||| || ||||| || | |||||| |||| Sbjct 3261523 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 3261464 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| || ||| | || || | ||| || ||||| || |||| || |||||||| | | Sbjct 3261463 ACAAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTG 3261404 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || ||| | || || | ||| |||||| | ||| | Sbjct 3261403 GAATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAA 3261344 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || |||||||| ||||| || || ||||| ||||||||||| Sbjct 3261343 CTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||||| | || |||||| || | ||||||||||| Sbjct 3259396 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 3259337 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| |||| ||| || |||||||| || || || |||||||| | || Sbjct 3259336 CAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 3259277 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| |||| || | ||| || ||| | || || Sbjct 3259276 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 3259217 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | || ||||| || ||||||||||| Sbjct 3259216 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 3259166 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | ||| ||| || || | || ||||||||| Sbjct 3260307 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3260248 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| ||||| ||||||||||| || ||||| || |||||||| | || Sbjct 3260247 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGA 3260188 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| || || | ||| || Sbjct 3260187 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260128 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || || || ||||| || |||||||| Sbjct 3260127 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381201353795484