Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 506 3e-138 seq1 280 2e-70 >seq11 Length=2963766 Score = 506 bits (560), Expect = 3e-138 Identities = 1255/1886 (67%), Gaps = 42/1886 (2%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||||| ||||| || || | | | |||| |||||| || | || |||||||| Sbjct 1983220 TTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCA 1983161 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| ||||| |||| |||||||| || ||| || |||||| |||| | || Sbjct 1983160 GTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGT 1983101 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || || | ||| || || | ||||||||||||||||||||| || || | ||||||||| Sbjct 1983100 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCC 1983041 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 71030 ||||| || || || | ||| ||||||| |||||| || || |||| || ||| Sbjct 1983040 ATTTTGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTA-TATG 1982982 Query 71031 TTCTGGAA-GGTTTGTAT--TCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 | ||| | || || || | || || || || | | | ||||| ||||||| || Sbjct 1982981 CTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTTTCAT 1982922 Query 71088 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGAGGATTAACTACTT 71146 || |||| ||| || ||| |||| | | | ||| || ||| |||| || |||| Sbjct 1982921 ATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAG-TGATGATTTACAACTT 1982863 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 ||||||| || || | || | || || || ||||| || || ||||| | ||||| Sbjct 1982862 GAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGACT 1982803 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 |||| || |||| |||||| || ||||| ||||| ||||| || || | || | | | Sbjct 1982802 CATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGT 1982743 Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTC---CCAATTCCAAAGATCCG 71323 | | || |||||| ||||| || || | |||| ||||||||||||||| Sbjct 1982742 TACGAACGCCATGTTGCTTAATTTTCTCCTTCA---ATTCGGTCCAATTCCAAAGATCAC 1982686 Query 71324 ATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCAT 71383 |||| || || |||||| || ||| ||| ||| Sbjct 1982685 TTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACAT 1982626 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 |||| || || | || | ||||||||||| ||| ||||| | || | || ||||| | Sbjct 1982625 ATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAGT 1982566 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 |||| |||||||| || | | ||| | |||||| || || |||||||| Sbjct 1982565 AAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATAAC 1982506 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 | | ||| || ||||| || || ||||| |||||||||||||| || | ||||| Sbjct 1982505 GCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCTGA 1982446 Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623 ||| || | | || || || || ||||||| |||||| ||||| |||||||| | || Sbjct 1982445 AATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAAAT 1982386 Query 71624 TTC---TGACTATTACTT--TGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCC 71675 | | | || | ||| ||||| || || || ||| ||| | | || | Sbjct 1982385 TACGTGTAACGGT--CTTGGTGACC---TCTTTGAGGCGCTTAAAGTCATACGTTTTCTC 1982331 Query 71676 ATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 | | ||||||| |||||| || | || || | ||||| || |||||||||| | Sbjct 1982330 GGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGG 1982271 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | | ||||| | |||||| || || | |||||||||||| || || || | ||| || Sbjct 1982270 TGCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTG 1982211 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 |||||||||||| ||||| ||||| ||||| | || |||| || ||||| || | Sbjct 1982210 CTGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTAC 1982151 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTATTATATTCTT-GTATCTC 71913 || ||||| ||||| || ||| | ||| | | || |||| | || || | | || Sbjct 1982150 TTGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACCTTCTTATTAGCACGTC 1982092 Query 71914 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 || || ||| |||| ||| ||| ||| ||||| || ||||| | | | ||| Sbjct 1982091 CTTCCT-GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAAA 1982033 Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 |||||||||| | || ||||| | ||||| ||| ||| | | || ||| ||||| Sbjct 1982032 CCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTTCGACACGTCTCATA 1981973 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || |||||||| ||||| ||||| || | |||||||| | ||||| || || || Sbjct 1981972 AATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTTACCG 1981913 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 || || || || | ||| | || | | ||||||| |||||| ||||||| ||| ||| Sbjct 1981912 GTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTAGATG 1981853 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || |||||||| || || ||||| | || | || ||||| | Sbjct 1981852 GCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATTGAAC 1981793 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGC--TT 72270 |||| || |||||| | | |||||| || | ||||| || |||| | || || | Sbjct 1981792 ACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCA---ATCGCAGTG 1981736 Query 72271 CCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 || | || || || | || ||| |||||| || || || || ||| || || | Sbjct 1981735 CCTTTCGCGCGTATGCAATGTACATT--TAGACCAATACCACCAGCAGATTTTGAAATCA 1981678 Query 72329 ATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 72387 | || ||| | | | | | | | | || || || || ||| |||| |||| ||||| Sbjct 1981677 AAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGAATCGTCCACCATGGTAAGT 1981619 Query 72388 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 72447 | || || |||| ||| | | | || | ||| || | || || ||||| Sbjct 1981618 AAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGAAGCA 1981559 Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCAT 72507 || ||||| | || || || | ||||| || ||||| |||| || ||||| Sbjct 1981558 TGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATCTTCA 1981499 Query 72508 TGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTA 72567 |||||| || | || || ||||||||||||||||| |||| ||||| || ||| | Sbjct 1981498 CCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCA 1981439 Query 72568 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627 || | || | ||| ||||| ||| | ||||||||||||||||| ||||| ||| Sbjct 1981438 TTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTGTAACCAAAA 1981379 Query 72628 TCTCGTTCGTAAATAATAACCGAATT 72653 || || || || || ||| | || || Sbjct 1981378 TCGCGGTCATATATGATAGCAGAGTT 1981353 >seq1 Length=5074932 Score = 280 bits (310), Expect = 2e-70 Identities = 499/724 (69%), Gaps = 7/724 (1%) Strand=Plus/Plus Query 41878 TCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACA 41937 ||||| ||| || ||| | ||| || | ||||| ||||| ||| | || ||| Sbjct 4719455 TCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACA 4719514 Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 |||||| || || | ||||| || | ||| |||| | |||||||| ||||| | || Sbjct 4719515 ATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAAC 4719574 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 42057 || |||| || || | | ||| | ||| ||| | | ||||||| || Sbjct 4719575 AGCTTCTGAAATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAA 4719634 Query 42058 CATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAA 42117 ||| ||||||||||| || || || ||||||||||||| |||| ||| || ||||| Sbjct 4719635 CATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAA 4719694 Query 42118 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGA 42177 || | || ||||||| || || || ||||||||||| || || ||||| ||| Sbjct 4719695 TGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACT 4719754 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTG 42235 ||||| || ||||| || || ||||| ||||| | | || ||| | ||| ||| Sbjct 4719755 GAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTT 4719814 Query 42236 TCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 | | | |||| | |||||||| ||||| ||||| |||||| || || || Sbjct 4719815 AGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAAT 4719874 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 || || || | || ||| ||| || ||| |||| ||| ||||| || || | ||| Sbjct 4719875 AGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACT 4719934 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||||||| ||||| | ||||| || || || |||||||| ||||| || | ||||| Sbjct 4719935 ATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTC 4719994 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 ||||| || |||||| | || |||||| |||||||||| ||||| || || ||| Sbjct 4719995 TGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGA 4720054 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTGTTAATTTA 42532 || || || || || || || ||| || |||| | ||| | | ||| | | Sbjct 4720055 TGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGT-- 4720112 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 |||||||| ||||||||||| | ||||||||| || || ||||| || ||||||||| Sbjct 4720113 GCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCT 4720172 Query 42593 GCCT 42596 |||| Sbjct 4720173 GCCT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670835526290480