Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq11 141 9e-29 seq4 141 9e-29 seq138 104 2e-17 seq75 84.2 2e-11 >seq11 Length=2963766 Score = 141 bits (156), Expect = 9e-29 Identities = 935/1490 (63%), Gaps = 51/1490 (3%) Strand=Plus/Minus Query 156143 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 156202 || |||||||| | ||| || || || ||||| || || |||||||| |||||| Sbjct 1983214 ACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCAGTTTTG 1983155 Query 156203 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTT-GC 156261 || || |||||||||||| | ||| | || | | ||| | || ||| |||| || Sbjct 1983154 AGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTT-GCCATAGTTTGGTTCAGC 1983096 Query 156262 CATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTC 156321 || || | ||||||||| |||||||||||||| || || || | ||||| ||||||| Sbjct 1983095 CACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCCATTT- 1983037 Query 156322 AATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTAG 156381 | || | || ||| | |||| ||||| | || |||| | | || Sbjct 1983036 --TGATTGAGGTT------TTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTAT 1982985 Query 156382 ATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTGTTTGCCATGATTGTTTTTCG 156441 || | || || | || |||||| || | | | || || | ||| Sbjct 1982984 ATGCTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTTT 1982925 Query 156442 CATACTATTTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGACAAC 156501 |||| || | | | || | ||||||| | ||||| | || ||||| Sbjct 1982924 CATATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAGTGATGATTTACAAC 1982865 Query 156502 TTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT---ACTGTGAAACGGTTCAAA 156558 ||||||||| ||||| | ||||| | | | | ||| | ||| | |||||||| Sbjct 1982864 TTGAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGT---ATGGTTCAAA 1982808 Query 156559 TGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAA 156618 |||||| |||||| | |||||||| || | || || |||||| ||| | ||||| Sbjct 1982807 TGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAA 1982748 Query 156619 TGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAACGA 156678 || ||||| | || | || | || || ||||| | | ||| | ||| | Sbjct 1982747 AGAGTTACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATC 1982688 Query 156679 AGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCGGC 156738 | | ||| | ||| ||||| || || || | || || | || | ||| | Sbjct 1982687 ACTTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTAC 1982628 Query 156739 AAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGCGCAGCATG 156798 | | || ||||| || || | |||| |||||| || |||||| ||| Sbjct 1982627 ATATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATA 1982568 Query 156799 ATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTACGGTAT 156858 || | |||||| ||||||| ||| || | | || |||| || |||| || Sbjct 1982567 GTAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATA 1982508 Query 156859 GCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCG 156918 |||| | || || || ||||| |||||||| | |||||| |||||||||||||| | Sbjct 1982507 ACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCT 1982448 Query 156919 CATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAA 156978 | ||| ||||| ||||| || || || ||| || || ||||||||||| Sbjct 1982447 GAAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAA 1982388 Query 156979 ACTATCCACTAC-ATGTT--TGACCACAGTGTGCAATAGTTGAAAATCAAAAG---TATC 157032 | || || | || ||||| | || | | | ||| ||| | | | || Sbjct 1982387 ATTACGTGTAACGGTCTTGGTGACCTCTTTG---AGGCGCTTAAAGTCATACGTTTTCTC 1982331 Query 157033 ATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGG 157092 ||| | | | || | || ||||| |||| ||||| || || || ||||| Sbjct 1982330 GGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGG 1982271 Query 157093 CGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT 157152 || |||||| || ||||| | ||| ||||| || || || || || ||| Sbjct 1982270 TGCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTG 1982211 Query 157153 TTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGC 157212 ||||| || || || || ||||| || || |||||||||||||||||||| || || | Sbjct 1982210 CTGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTAC 1982151 Query 157213 TTGAATTTCTATGATGTTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGAA-----AC 157267 ||| ||| || ||| || | || | || | || ||| | | | || Sbjct 1982150 TTGCGATTCAATAATG--GCAAACCAAAG--ACTTTGTGCTTTTACCTTCTTATTAGCAC 1982095 Query 157268 TGGCCTTTATCCTCGTAATGTTT---GTACCAGTATTCAAAGTCATCACCATACGTATCG 157324 | ||| |||| | || ||| ||| | | |||||| || ||||| || || Sbjct 1982094 -GTCCT---TCCTGTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCA 1982039 Query 157325 TTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGT 157384 | | |||||| | || || ||||||| ||||| | || |||| || ||| Sbjct 1982038 TGTAAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTTCGACACGT 1981979 Query 157385 TTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCAC--GCGCTTTGGTG-TCT 157441 ||||||||| ||| || | ||| | ||||| | |||||| | |||| |||| ||| Sbjct 1981978 CTCATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGC---GGTGCTCT 1981922 Query 157442 TCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCA 157501 || | || ||||| || | |||| || | || || |||||| ||||| Sbjct 1981921 TCTTTACCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCC 1981862 Query 157502 ACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATA 157558 | ||| | || ||| ||| || || ||||||||||||||| | ||| | | | Sbjct 1981861 AGGTAGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACA 1981802 Query 157559 TTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 157608 ||||| || |||||||||||||| | || || | | |||||| || || Sbjct 1981801 TTATTGAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGT 1981752 >seq4 Length=3596895 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | ||| ||||||| |||||| || || || |||||||||||| Sbjct 3259396 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 3259337 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| ||||| ||||| ||| |||| | |||||| ||||| || || Sbjct 3259336 CAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 3259277 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| || ||| | | ||| | || || | ||||| || Sbjct 3259276 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 3259217 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| ||||| || || ||||| |||||||| Sbjct 3259216 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || ||||| | ||| ||||| || ||||| ||||| ||| Sbjct 3261522 GCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGA 3261463 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || |||||||| ||||| || ||||||||||||| ||||| || | Sbjct 3261462 CAAAGTTCGTCCA-TCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTG 3261404 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | ||||| || || || ||| || |||| | || | ||||||| || || | Sbjct 3261403 GAATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAA 3261344 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | ||| | || |||||||| | ||| || ||||| ||||||||| Sbjct 3261343 CTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCATA 3261294 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || || | ||||| || | || ||||| || || |||||||| ||| | Sbjct 3259851 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 3259792 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || | ||| ||||| || ||||||||||||| ||||| ||||| Sbjct 3259791 AAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGA 3259732 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| ||| | | ||| | || || | ||||| || Sbjct 3259731 ATACCCTCCTTGTCCTGAATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACC 3259672 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||||||||| ||||| ||||||||| Sbjct 3259671 TCCAGAGTAATTGTTTTACCCGTCAATGTTTTAACGAAGATTTGCATA 3259624 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || |||||||| || || |||| ||||| ||||| || ||||| |||||| | Sbjct 3261065 CCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3261006 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| | || ||||| || ||||||||||||| ||||| || || Sbjct 3261005 AGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3260946 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || || || || | | || | || || | ||| |||||| Sbjct 3260945 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260886 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| || | || || ||||| ||||||||| Sbjct 3260885 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCATA 3260838 >seq138 Length=433312 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | |||||||| | ||||| ||||| || || || || || Sbjct 21756 GCCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGC 21697 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| || || | ||||| || ||| | || ||||| || ||||| || || Sbjct 21696 CAATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGG 21637 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || |||||| || | ||||| | || |||| ||||| || Sbjct 21636 AATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAAC 21577 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | |||||||| || | ||||||||||| |||||||| ||| Sbjct 21576 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATTGCT 21525 >seq75 Length=755269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 60391 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 60450 |||||||| |||||||||||||| | || | || || | ||||||||||| | Sbjct 515236 GCTTCAATATTGCCCAAATCACCCAAATGACGATTTTCATCGGTTGGCGCACCATGTTCC 515177 Query 60451 CTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAAT 60510 | || | |||||||||||| ||| || || || |||||||| || | || |||||| Sbjct 515176 TTGCCAGCAGGATTAAAATGTGGTCCAGCTGAGGTGCAGCCGTTAGTGTTATCACCAAAT 515117 Query 60511 TCGTGTACGTGAAAACCGTGCAGTCCTTT 60539 || ||||| || || || || || || || Sbjct 515116 TCATGTACATGGAAGCCATGAAGACCCTT 515088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506784988659360