Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1317 138 2e-27 seq1 132 7e-26 seq28 118 2e-21 seq11 109 8e-19 >seq1317 Length=56073 Score = 138 bits (152), Expect = 2e-27 Identities = 409/627 (65%), Gaps = 14/627 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 ||||| || || ||||| || || || ||||| | | || ||||| ||||||||| || Sbjct 40365 TTGCGATAGAAAATGACACCAGCACGCGGACCACGCAACGTTTTGTGTGTTGTAGTGCTC 40424 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || | || ||| ||||| || || || | | || | || || ||||| Sbjct 40425 ACCACATCCGCATATTCAAATGGTGAGGGTATTAAACCAGCTGCCACTAAACCAGCAATA 40484 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 ||||| |||||||| | || | || | | ||| || | ||||| || | Sbjct 40485 TGTGCCATATCGGCAAAGAGATATGAATCATTTTGATCACAGATTTTACGGAAGCGGGCA 40544 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | | || | || ||| || ||||| || | | |||| |||| || Sbjct 40545 TAGTCAAGACAACGTGAGTAACAAGAAACACCAGCTATAATAACGCGAGGTCTGAAGAGT 40604 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 |||||| || | | | || | || |||| || || || || | ||||| || || Sbjct 40605 TTGGCATTCGCCTCCAATTGATCGTAATCGATAAGACCCGTTTGTGCGTCCACTTTATAT 40664 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTTG------CG----GAATCCG 127449 ||||| || || ||| | | |||||| || || | |||| || ||| ||| Sbjct 40665 GGCATACTCTCAAAATATATTGATGTTGCTGAAATACGTTTATTAGCCGTCATGAAACCG 40724 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || || | ||||| || || |||| ||| || ||||| || | | |||| |||| | | Sbjct 40725 TGTGTTAAATGGCCACCATCTGGCAAATCAAGACCCATTATACGATCGTGGGGTTGACAG 40784 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | ||||||||||||||||||| || ||| || || || || || ||| || ||| Sbjct 40785 AGCGCAGTGTACACGGCAAAGTTAGCTGGCGAACCAGAATAAGGCTGAACATTGACGCCC 40844 Query 127570 CATTCGGACTCG-TTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 ||||| || | || | | || ||| || |||| || || || |||| | Sbjct 40845 CATTC-CTCTGGATTGAGACGAAATGCTTCAAGTGCACGCTTTTGAGCAAGTCGTTCCAC 40903 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTACTT 127688 ||| ||||| || || ||||||||||| ||||| || ||| | || || |||||||| Sbjct 40904 TTCATCAATAAATTCATTGCCACCATAGTACCGCTTGCCAGGCATGCCTTCGGAGTACTT 40963 Query 127689 GTTGATGAGACACGAACTCATGCATTC 127715 ||| || || ||||||| |||||| Sbjct 40964 ATTGTGCAGGCAAGAACTCAAGCATTC 40990 >seq1 Length=5074932 Score = 132 bits (146), Expect = 7e-26 Identities = 361/546 (66%), Gaps = 25/546 (5%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || || || ||||| || || || || ||||| || || || || | |||| Sbjct 4720176 AGGCAGAAGCATCGTTCTGGACAGTTGAGGAAGTAGATCTTTCTAAAGATATGGATGATT 4720117 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||| | ||||| | ||| ||| | || || || ||| | || |||||||| | Sbjct 4720116 GGG---CACGTCTCACTGATAATGAACGACATTTCATTTCACACGTGTTAGCCTTCTTCG 4720060 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACC 125216 ||| || ||||| || || || || ||| | ||||| ||| ||| ||||| || Sbjct 4720059 CCGCATCTGATGGTATTGTGAATGAAAATTTAGTTGA-ACGCTTCAGCCAAGAAGTGCAA 4720001 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 || |||||| ||||| || ||||| ||||| || || || ||||| || ||| Sbjct 4720000 GTTACAGAGGCACGTTGCTTCTATGGATTTCAAATTGCTATGGAAAATGTGCATTCTGAA 4719941 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGC--TCT 125334 ||||| || | | ||||| | ||| ||| ||| || ||| ||| | || | | Sbjct 4719940 ATGTATAGTATATTAATTGATACGTATATTAAGGATTCGAAAC--AAAGAAATTACTTAT 4719883 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATA---CGTAAAAAGGCTCAATGGGTGATTCGGT 125391 | ||||| || || || |||| | || ||||| |||| | |||| || | Sbjct 4719882 TCAACGCTATTGAGACAATGCCTGCGGTAAAGCGTAA---GGCTGATTGGGCACTTGCTT 4719826 Query 125392 GGAT-----CGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446 |||| | | | || | | || || || | | | ||||| ||||| || Sbjct 4719825 GGATTTCTTCTAAGTCGGCCAACTTTGGT-----GAACGTGTAATTGCATTTGCCGCTGT 4719771 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 || ||||| ||||| || |||||||| | ||||||||||| ||||| ||||| | Sbjct 4719770 TGAAGGCATTTTCTTCAGTGGCAGTTTTGCTTCGATCTTTTGGCTTAAGAAACGCGGTTT 4719711 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 ||||| || |||| ||| || | || || ||||| ||||| ||||| ||||| Sbjct 4719710 AATGCCTGGCTTGACATTTTCTAATGAACTAATCTCACGAGATGAGGGTCTACATTGTGA 4719651 Query 125567 CTTTGC 125572 ||| || Sbjct 4719650 CTTCGC 4719645 >seq28 Length=1372515 Score = 118 bits (130), Expect = 2e-21 Identities = 242/355 (68%), Gaps = 6/355 (2%) Strand=Plus/Minus Query 70053 CCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCA 70112 |||||||| |||| || ||||| || ||||| || || || |||||| | || | || Sbjct 390307 CCGACAGAGAAGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGG 390248 Query 70113 CCAAGTATGTAGACTGCGAGACAGACT-ATTCGGGTCAGGGTGTTGATCAATTGCAGACA 70171 ||||||| | | ||| || | ||| | | | ||||| | |||||| | ||| | Sbjct 390247 CCAAGTACAGAAATTGCAAGG-ACACTTACAAAGATGAGGGTATAGATCAACTTCAGCAA 390189 Query 70172 ATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAAT 70231 | |||||||| ||| | |||||||| ||| | | || |||||| | |||||| Sbjct 390188 GTAATTGACACAGTCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCTTGGAAT 390129 Query 70232 CCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCG 70291 || | ||| | | |||||||| |||||||| ||||| || | | || |||| | | Sbjct 390128 CCAGTCGATATTCCTCAAATGGCTCTACCACCTTGTCATTGCCTTACACAATTTT--TTG 390071 Query 70292 TA--CGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTG 70349 | | |||| | || || || | | || || | ||||| |||||||| | |||| Sbjct 390070 TTGCCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCTGACATGGGATTGGGTG 390011 Query 70350 TACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 |||| ||||| ||||| || || | | || ||||||||||||| ||||| Sbjct 390010 TACCATTTAATATTGCCTCGTACGCTTTACTTACCTACATGATTGCTCATATTAC 389956 >seq11 Length=2963766 Score = 109 bits (120), Expect = 8e-19 Identities = 186/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 ||||| |||| | | | ||| | ||||||||||| || ||| |||| ||||| ||| Sbjct 1981752 ACAAATGGCACCTCGAATGGTTTGGTGCCAATGCTGCGAGTGTTCAAT--AATGTAGCAC 1981809 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || || || ||| ||||||||||||||| | ||| ||||| ||||||| | Sbjct 1981810 GTTATGTGGATCAAGGTGGCGGTAAACGGCCAGGCGCCTTTGCCATCTACCTGGAACCAT 1981869 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||| || || | || || ||| | || || |||||| | || |||||| | Sbjct 1981870 GGCATGCTGATATATTCGAATTTTTGGATTTGAAGAAAAACACCGGTAAAGAAGAGCACC 1981929 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | ||||| || ||||| || || || ||| | || ||| | || |||| || ||| | | Sbjct 1981930 GCGCCAGAGATTTGTTCTACGCTCTGTGGATACCTGATCTATTTATGAGACGTGTCGAAG 1981989 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCC 97072 | || ||||| ||||||||||| Sbjct 1981990 CCAATGAAGACTGGTCGCTAATGTGCCC 1982017 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 ||||| ||||| ||||||||| | || || ||| | |||||||| || | || Sbjct 1982997 TACAAAACTGTTTGGGAGATTTCTGTGAAAACCTCAATCAAAATGGCTGCAGATCGTGGC 1983056 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | | ||| || || ||||| |||||||| | |||| || || || | ||| | Sbjct 1983057 GCTTTCATCGATCAAAGTCAGTCGTTCAACATACACGTGGCTGAACCAAACTATGGCAAA 1983116 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 | ||||| ||||||||||||| ||||| || ||||| || |||||||| || || Sbjct 1983117 CTTACTTCTATACACTTTTACGGTTGGAAGGCAGGTCTCAAAACTGGCATGTATTACTTG 1983176 Query 98220 AGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 | || || | ||| | ||||| |||| |||||| |||||| Sbjct 1983177 CGCACGAAACCCGCCGCAAATGCTATACAATTTACTGTGGAC 1983218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740723889238480