Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4 120 2e-22 seq15 107 1e-18 >seq4 Length=3596895 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | || ||||||||| | ||||| || || || || || |||||| Sbjct 3259623 CCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGAC 3259564 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || || |||||||||||| | |||||||||||||| || || Sbjct 3259563 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 3259504 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || |||||| ||| || ||| | || || |||||| | || || Sbjct 3259503 ATTCCTTCCTTATCTTGAATTTTAGCT-TTGACATTCTCAATAGTATCGGAAGGCTCAAC 3259445 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| || |||| |||||| || ||||| ||||| Sbjct 3259444 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | || || || ||||| || || || ||||| |||||||| || Sbjct 3261293 CCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 3261234 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || ||||| || || ||| | |||||||||||||| || ||| Sbjct 3261233 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 3261174 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || ||| || ||| |||||||||| ||| ||| || Sbjct 3261173 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACT 3261114 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| |||||||| || || || || || || |||||||||||| Sbjct 3261113 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCATA 3261066 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || ||||| || || ||||| || ||||| |||||| || | | ||||| Sbjct 3260292 AATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCT 3260233 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || |||||||| ||| | |||||||||||||| || ||||||||| || || || Sbjct 3260232 TCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCT 3260173 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| || | || |||||||| ||||| || ||||| |||||| Sbjct 3260172 TGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTT 3260113 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || ||||||||| Sbjct 3260112 TTGCCAGTGAGGGTCTTCACGAAGATTTGCATA 3260080 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || || || || |||||||||||| | | | ||||||| Sbjct 3259378 AACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTC 3259319 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || || | || ||||||||||| || || |||||||||||||| Sbjct 3259318 CAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTG 3259259 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| || ||| || ||| |||| || |||||| ||| || || | || ||||| | Sbjct 3259258 AATCTTAGCT-TTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCT 3259200 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 | || |||| || || || || |||||||| || |||| Sbjct 3259199 TGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 3259161 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | | ||||| || ||||| || || || || |||||||| || Sbjct 3260079 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGAC 3260020 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || ||||| || || ||| | |||||||||||||| || ||| Sbjct 3260019 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 3259960 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || || || || || ||| || | || |||||||| | ||||| Sbjct 3259959 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACT 3259900 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| ||||| || ||||| || || || || ||||||||| Sbjct 3259899 TCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 3259852 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | ||| | | ||||| || ||||| || || || || |||||||| ||| Sbjct 3260568 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGG-- 3260511 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | || || | ||| | ||||||| ||| | ||||| |||||||| || ||| Sbjct 3260510 ACAAGTCGTCCATCTCCA----GTTTGCCGGCGAAGATCAA-CGTTGTTGATCTGGTGGG 3260456 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 | ||| || || || || ||| || ||| |||||||||| ||| ||| || Sbjct 3260455 AATCCCTCCTTATCTTGGATCTTGGCTTTGACA-TTTCTATGGTGTCGGATGGTTCAACT 3260397 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||||||||| || || || || ||||||||||||||| Sbjct 3260396 TCCAAGGTGATGGTTTTACCGGTGAGGGTCTTCACAAAAATTTGCATA 3260349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || || ||||| ||||| ||| | | ||| | || || Sbjct 3261503 ACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCCATCCTCG 3261444 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || || ||| | |||| ||||||||| || |||||| || || || || | Sbjct 3261443 AGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGA 3261384 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTT-TCTACATCTAAGGTAATGGTTTT 15333 || || ||||||| | || || || || | || || || || || ||||| ||||| Sbjct 3261383 ATCTTAGCCTTTACATTCTCAATTGTGTC-CGATGGCTCAACTTCCAAAGTAATAGTTTT 3261325 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||||||||| Sbjct 3261324 GCCGGTGAGTGTCTTCACGAAAATTTGCATA 3261294 >seq15 Length=2140121 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || || ||||| |||||||| ||| | | | | ||||| Sbjct 600235 AACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTC 600294 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||||||| || ||| | |||||||| |||||||| || || || |||||||| Sbjct 600295 TAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCTTG 600354 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| || ||| |||| ||||| || | || || |||||||| ||||| | Sbjct 600355 GATTTTAGCT-TTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCT 600413 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || | ||||| || ||||| ||||| Sbjct 600414 TACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362019419892318