Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 1e-14 seq138 84.2 2e-11 >seq4 Length=3596895 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| |||||||| || || || |||||||||||| || || |||||| Sbjct 3259377 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 3259318 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| || || ||| | || | | |||||||| ||| | ||||||||||| | Sbjct 3259317 AGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 3259258 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | ||| || |||| ||||| |||| || ||||| ||| Sbjct 3259257 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 3259198 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || ||||| || || || || ||||||||||| Sbjct 3259197 CCAGTCAAGGTCTTCACGAAGATTTGCATTTT 3259166 >seq138 Length=433312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||||| ||||| ||||| || || || || || ||| || | ||| ||| Sbjct 21737 ACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCC 21678 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 || ||||| || ||| |||| || | ||||||||| || | ||||| || || | Sbjct 21677 AACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGA 21618 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || || ||| || ||| |||||| || | || ||||| ||| Sbjct 21617 ATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTG 21558 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAAC--TCTTATAAA 20225 || || | ||||| || |||||||||||| | ||| ||||| ||| Sbjct 21557 CCCGTAAGGGTTTTTACGAAAATTTGCATTGCTGAACAATCTTACAAA 21510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419402093599638